Locus 2096

Sequence ID 2L_DroMel_CAF1
Location 5,648,093 – 5,648,185
Length 92
Max. P 0.703391
window3386

overview

Window 6

Location 5,648,093 – 5,648,185
Length 92
Sequences 6
Columns 96
Reading direction reverse
Mean pairwise identity 74.31
Mean single sequence MFE -10.05
Consensus MFE -7.17
Energy contribution -6.45
Covariance contribution -0.72
Combinations/Pair 1.40
Mean z-score -0.98
Structure conservation index 0.71
SVM decision value 0.36
SVM RNA-class probability 0.703391
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5648093 92 - 22407834
UUACAUUUAUUCUCUGCCGC-CGUGCAAUUUAUAGCACUCAACGCACUCUUCCCUAGCCUUCUUCUCGGUUUUUUUUUUUUUAU---UUGAAGAUA
..............(((...-.((((........)))).....))).(((((...((((........)))).............---..))))).. ( -10.37)
>DroPse_CAF1 113193 72 - 1
UUACAUUUAUUUUGUGCCGCCCGUGCAAUUUAUAGCAU----C--GCUCGU--------------UCG-GUCGUUUUUCUUUAU---UUGAAGAUU
...............((((..((.((............----.--)).)).--------------.))-))......(((((..---..))))).. ( -10.72)
>DroSec_CAF1 92073 89 - 1
UUACAUUUAUUCUCUGCCGC-CGUGCAAUUUAUAGCACUCAACGCACUCUUCCCUAGCCUUCAUCUC--CGCU-UUUUUUUUAU---UUGAAGAUA
..............(((...-.((((........)))).....)))............(((((....--....-..........---.)))))... (  -9.11)
>DroSim_CAF1 92472 90 - 1
UUACAUUUAUUCUCUGCCGC-CGUGCAAUUUAUAGCACUCAACGCACUCUUCCCUAGCCUUCUUCUG--UUUUUUUUUUUUUAU---UUGAAGAUA
..............(((...-.((((........)))).....)))..............(((((..--...............---..))))).. (  -9.21)
>DroYak_CAF1 93903 87 - 1
UUACAUUUAUUCUCUGCCGC-CGUGCAAUUUAUAGCACUCAACGCACUCUUCCCUAGCUUUUUUUUA--------UUUCCUUUUUUUUUAAGGAUA
..............(((...-.((((........)))).....))).....................--------..(((((.......))))).. ( -10.20)
>DroPer_CAF1 115666 72 - 1
UUACAUUUAUUUUGUGCCGCCCGUGCAAUUUAUAGCAU----C--GCUCGU--------------UCG-GUCGUUUUUCUUUAU---UUGAAGAUU
...............((((..((.((............----.--)).)).--------------.))-))......(((((..---..))))).. ( -10.72)
>consensus
UUACAUUUAUUCUCUGCCGC_CGUGCAAUUUAUAGCACUCAACGCACUCUUCCCUAGCCUUCUUCUC__GUCUUUUUUCUUUAU___UUGAAGAUA
......................((((........)))).......................................((((((.....)))))).. ( -7.17 =  -6.45 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:29 2006