| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,646,322 – 5,646,412 |
| Length | 90 |
| Max. P | 0.533343 |
| Location | 5,646,322 – 5,646,412 |
|---|---|
| Length | 90 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 79.71 |
| Mean single sequence MFE | -23.35 |
| Consensus MFE | -14.63 |
| Energy contribution | -14.58 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.63 |
| SVM decision value | -0.00 |
| SVM RNA-class probability | 0.533343 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5646322 90 - 22407834 AUUUUAUGGCGCAGCCGGAGUGGCCGGAAAAUACGA------UACAAAUGUAUGUGUGCCAAGGUGCCGGGCGUGUGGAAUGGAAA------------------UGGAAAUCAA .((((((..(((((((.(.(((.((((...((((.(------(((....)))))))).))..)))))).))).))))..)))))).------------------.......... ( -23.80) >DroSec_CAF1 90273 90 - 1 AUUUUAUGGCGCAGCCGGAGUGGCCGGAAAAUACGA------UACAAAAGUAUGUGUGCCAAGGUGCCGGGCGUGUGGAAUGGAAA------------------UGGAAAUCAA .((((((..(((((((.(.(((.((((...((((.(------(((....)))))))).))..)))))).))).))))..)))))).------------------.......... ( -23.50) >DroSim_CAF1 90673 90 - 1 AUUUUAUGGCGCAGCCGGAGUGGCCGGAAAAUACGA------UACAAAAGUAUGUGUGCCAAGGUGGCGGGCGUGUGGAAUGGAAA------------------UGGAAAUCAA .((((((..(((((((...((.(((((...((((.(------(((....)))))))).))..))).)).))).))))..)))))).------------------.......... ( -25.50) >DroEre_CAF1 92574 106 - 1 AUUUUAUGGCGCAGCCGGAGUGGCCGGAAAAUGCGA------UACAAUAGUAUGUGUGCCAAGGUGCCGGGCGU--GGAGUGGAAAUGAAAAUGAAAAUGAGAAUGGAAAUCAA ......(((((((.((((.....))))....))).(------((((......))))))))).(((.(((..(..--...((....((....))....))..)..)))..))).. ( -22.70) >DroYak_CAF1 92024 88 - 1 AUUUUAUGGCGCAGCCGGAGUGGCCGGAAAAUAGGA------UACAAAAGUAUGUGUGCCAAGGUGCCGGGCGU--GGAAUGGAAA------------------UGGAAAUCAA ((((((((((((..((((.....))))......(((------((((......))))).))...)))))....))--))))).....------------------.......... ( -21.40) >DroAna_CAF1 87565 92 - 1 AUUUUAUGGCGCAGCCAGGCUAUUCGAAAAGUACUAAGGCCAGGGAGCAGUAUGUGUGCCGAAGGUCCUGGC----CAAAUAGAAA------------------UGAAAAUCGA ......((((...))))......((((..........((((((((..(.(((....))).)....)))))))----)...((....------------------))....)))) ( -23.20) >consensus AUUUUAUGGCGCAGCCGGAGUGGCCGGAAAAUACGA______UACAAAAGUAUGUGUGCCAAGGUGCCGGGCGU__GGAAUGGAAA__________________UGGAAAUCAA ......(((((((.((((.....))))...((((...............)))).)))))))..................................................... (-14.63 = -14.58 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:28 2006