Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,642,103 – 5,642,209 |
Length | 106 |
Max. P | 0.986287 |
Location | 5,642,103 – 5,642,209 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 77.91 |
Mean single sequence MFE | -33.30 |
Consensus MFE | -24.50 |
Energy contribution | -24.14 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.19 |
Mean z-score | -4.67 |
Structure conservation index | 0.74 |
SVM decision value | 1.73 |
SVM RNA-class probability | 0.974294 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5642103 106 + 22407834 -A-UAACAUAUUGGUCCAACUUGCCUUAGAAUAGGGGAGCUUAACUUAUGUUUUUGAUGUUUAAGUUAAAAGCCUCUGUUCUAAGACAAUUUGAUGAUCAAAACAG---CC -.-.......(((((((((.(((.(((((((((((((...((((((((.............))))))))...))))))))))))).))).)))..)))))).....---.. ( -33.42) >DroSec_CAF1 86075 108 + 1 AAUCAAAAUCUUGGUCCAACUUGCCUUAGAAUAGGGGAGCUUAACUUGUGUUUUUAAUGUUUAAGUUAAAAGCCACUGUUCUAAGACAAUUUGAUGAUCAAAACCA---CC ..........(((((((((.(((.((((((((((.((...((((((((.............))))))))...)).)))))))))).))).)))..)))))).....---.. ( -28.92) >DroSim_CAF1 86501 111 + 1 AAUCAAAAUCUUGGUCCAACUUGCCUUAGAAUAGGGGAGCUUAACUUGUGUUUUUAAUGUUUAAGUUAAAAGCCACUGUUCUAAGACAAUUUGAUGAUCAAAACUUCAACU ..........(((((((((.(((.((((((((((.((...((((((((.............))))))))...)).)))))))))).))).)))..)))))).......... ( -28.92) >DroEre_CAF1 88376 107 + 1 AAU-AACGUUUUGGUCCCACUUGUCUUAGAAUAGGGGAGCUUAACUUGUGUGUGUUAUGCUUAAGUUAAGAGCCUUUAUUCUAAGUCAAUUCGACUGCCAACUCUG---CG ...-..(((.(((((.....(((.(((((((((((((..(((((((((.((((...)))).)))))))))..))))))))))))).))).......)))))....)---)) ( -36.40) >DroWil_CAF1 126165 102 + 1 GAACAA------GGUCAAACUUGUCUUAGAAUAGGGGAGCUUAACUUAUAUUGUUUUGCUUAAAGUUAAGAGCCUCAAUUCUAAGAUAAUGCGACUAUCACCGCAG---CA ...(((------(......))))(((((((((.((((..((((((((...............))))))))..)))).)))))))))...((((........)))).---.. ( -32.16) >DroYak_CAF1 87794 107 + 1 AAU-GAAAUCUUGGUCCCACUUGUCUUAGAAUAGGGGAGCUUAACUUAUGUAUAUCAUGUAUAAGUUAAGAACCUUUAUUCUAAGACAAUUCGACUACAAAAUCAA---CU ..(-((.....(((((....(((((((((((((((((..((((((((((((((...))))))))))))))..)))))))))))))))))...))))).....))).---.. ( -40.00) >consensus AAUCAAAAUCUUGGUCCAACUUGCCUUAGAAUAGGGGAGCUUAACUUAUGUUUUUAAUGUUUAAGUUAAAAGCCUCUAUUCUAAGACAAUUCGACGAUCAAAACAG___CC .............(((....(((.(((((((((((((...((((((((.............))))))))...))))))))))))).)))...)))................ (-24.50 = -24.14 + -0.36)
Location | 5,642,103 – 5,642,209 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 77.91 |
Mean single sequence MFE | -28.18 |
Consensus MFE | -20.08 |
Energy contribution | -21.08 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.11 |
Mean z-score | -3.23 |
Structure conservation index | 0.71 |
SVM decision value | 2.04 |
SVM RNA-class probability | 0.986287 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5642103 106 - 22407834 GG---CUGUUUUGAUCAUCAAAUUGUCUUAGAACAGAGGCUUUUAACUUAAACAUCAAAAACAUAAGUUAAGCUCCCCUAUUCUAAGGCAAGUUGGACCAAUAUGUUA-U- ((---(....(((.((..(((.(((((((((((.((.((..(((((((((.............)))))))))..)).)).))))))))))).))))).)))...))).-.- ( -26.22) >DroSec_CAF1 86075 108 - 1 GG---UGGUUUUGAUCAUCAAAUUGUCUUAGAACAGUGGCUUUUAACUUAAACAUUAAAAACACAAGUUAAGCUCCCCUAUUCUAAGGCAAGUUGGACCAAGAUUUUGAUU ..---.(((((((.((..(((.(((((((((((.((.((..((((((((...............))))))))..)).)).))))))))))).))))).)))))))...... ( -26.96) >DroSim_CAF1 86501 111 - 1 AGUUGAAGUUUUGAUCAUCAAAUUGUCUUAGAACAGUGGCUUUUAACUUAAACAUUAAAAACACAAGUUAAGCUCCCCUAUUCUAAGGCAAGUUGGACCAAGAUUUUGAUU (((..((((((((.((..(((.(((((((((((.((.((..((((((((...............))))))))..)).)).))))))))))).))))).))))))))..))) ( -32.56) >DroEre_CAF1 88376 107 - 1 CG---CAGAGUUGGCAGUCGAAUUGACUUAGAAUAAAGGCUCUUAACUUAAGCAUAACACACACAAGUUAAGCUCCCCUAUUCUAAGACAAGUGGGACCAAAACGUU-AUU ..---..(..((((...((.(.(((.(((((((((..((..((((((((...............))))))))..))..))))))))).))).).)).))))..)...-... ( -24.26) >DroWil_CAF1 126165 102 - 1 UG---CUGCGGUGAUAGUCGCAUUAUCUUAGAAUUGAGGCUCUUAACUUUAAGCAAAACAAUAUAAGUUAAGCUCCCCUAUUCUAAGACAAGUUUGACC------UUGUUC ..---.(((((......)))))...(((((((((.(.((..((((((((...............))))))))..)).).)))))))))((((......)------)))... ( -24.96) >DroYak_CAF1 87794 107 - 1 AG---UUGAUUUUGUAGUCGAAUUGUCUUAGAAUAAAGGUUCUUAACUUAUACAUGAUAUACAUAAGUUAAGCUCCCCUAUUCUAAGACAAGUGGGACCAAGAUUUC-AUU .(---..(((((((..(((...(((((((((((((..((..((((((((((...........))))))))))..))..)))))))))))))....)))))))))).)-... ( -34.10) >consensus AG___CUGUUUUGAUAAUCAAAUUGUCUUAGAACAGAGGCUCUUAACUUAAACAUAAAAAACACAAGUUAAGCUCCCCUAUUCUAAGACAAGUUGGACCAAGAUUUUGAUU .................((((.(((((((((((.((.((..((((((((...............))))))))..)).)).))))))))))).))))............... (-20.08 = -21.08 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:27 2006