Locus 2092

Sequence ID 2L_DroMel_CAF1
Location 5,641,207 – 5,641,297
Length 90
Max. P 0.757267
window3380

overview

Window 0

Location 5,641,207 – 5,641,297
Length 90
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 78.65
Mean single sequence MFE -20.78
Consensus MFE -15.81
Energy contribution -14.82
Covariance contribution -1.00
Combinations/Pair 1.39
Mean z-score -1.24
Structure conservation index 0.76
SVM decision value 0.49
SVM RNA-class probability 0.757267
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5641207 90 + 22407834
UUUGAUCACCAGUAACUGAGAUUGUUUC-UGAUACGGUUUCGUUUUCUGGCAAUCAAAAGAACUUGGACUCGACUUGAAUU--CAACUACUUC
((((((..((((.(((.((((((((...-....)))))))))))..))))..)))))).....(((((.((.....)).))--)))....... ( -20.30)
>DroSec_CAF1 85185 91 + 1
UUUGAUCACCAGUAAGUGAGAUUGUUUC-UGAUACGAUUUCGUUUUCUGGCAAUCAAAGGAACUC-GACUCGACUUGAAUCUACAACUACCUC
((((((..((((.((((((((((((...-....)))))))))))).))))..))))))(((..((-((......)))).)))........... ( -20.70)
>DroSim_CAF1 85610 91 + 1
UUUGAUCAUCAGUAAGUGAGAUUGUUUC-UGAUACGAUUUCGUUUUCUGGCAAUCAAAGGAACUC-GACUCGACUUGAAUCUACAACUACCUC
((((((..((((.((((((((((((...-....)))))))))))).))))..))))))(((..((-((......)))).)))........... ( -18.20)
>DroEre_CAF1 87528 89 + 1
AUUGAUCACCGGUUACUGAGGUUGUGCC-ACAUUCGGCUUCGUUUCCUGGCGAUCAAAAGAACUC-GACUCGGCUCGAAUC--CCAGUACCUC
.((((((.((((..(.((((((((....-.....)))))))).)..)))).))))))......((-((......))))...--.......... ( -23.40)
>DroYak_CAF1 86855 89 + 1
AUUGAUCACCGGUUACUGAGGUUGUUCC-UUCUUUGGCUUCGUUUUCUGGCGAUCAAAAGAACUC-GACUCGACUCGAAUC--CAACCAACUU
.((((((.((((..(.((((((((....-.....)))))))).)..)))).))))))......((-((......))))...--.......... ( -21.00)
>DroAna_CAF1 83194 85 + 1
UUUGAUCACUGGUUACUGAGGUUGUUUUGUCAUA-AGCUUCGUUUUCUGGCGAUCAAAUACGCUC-GACU----UUGGGCC--CAACCACCUG
(((((((.(..(..(.(((((((...........-))))))).)..)..).)))))))...((((-(...----.))))).--.......... ( -21.10)
>consensus
UUUGAUCACCAGUAACUGAGAUUGUUUC_UGAUACGGCUUCGUUUUCUGGCAAUCAAAAGAACUC_GACUCGACUUGAAUC__CAACUACCUC
.(((((..((((....(((((((((........)))))))))....))))..))))).................................... (-15.81 = -14.82 +  -1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:23 2006