Locus 2091

Sequence ID 2L_DroMel_CAF1
Location 5,628,243 – 5,628,354
Length 111
Max. P 0.590921
window3379

overview

Window 9

Location 5,628,243 – 5,628,354
Length 111
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 83.03
Mean single sequence MFE -30.64
Consensus MFE -16.96
Energy contribution -17.52
Covariance contribution 0.56
Combinations/Pair 1.28
Mean z-score -2.14
Structure conservation index 0.55
SVM decision value 0.12
SVM RNA-class probability 0.590921
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5628243 111 + 22407834
CCAUAGUUACCAUUUAUAACCAUCCUUUCAUCGGAUAAACAUAGUAUUUAAAUUAAGAGGCAGUCACAUAUGCUGCCAACGAGGA-CUCUUGGUCCUUGAACCGUAAUCGGC
.....................((((.......))))......................((((((.......))))))..((((((-(.....)))))))..(((....))). ( -25.20)
>DroSec_CAF1 72292 111 + 1
CUAUAGUUACCAUAUAUGACCGUCCUUUAAGCGGAUAAAUAUGGCAUUUAAAUUAAGAGGCAGUCACAUAUGCUGGCAACGAGGA-CUCUUGGUCCUUGAACCUCAAUCCAC
.........((((((.((.((((.......)))).)).))))))............((((..(((((....).))))..((((((-(.....)))))))..))))....... ( -29.60)
>DroSim_CAF1 74010 111 + 1
CUAUAGUUACCAUAUAUGACCGUCCUUGCAGCGGAUAAAUAUGGCAUUUAAAUUAAGAGCCAGUCACAUAUGCUGGCAACGAGGA-CUCUUGGUCCUUGAAGCUCAAUCGAC
....((((.((((((.((.((((.......)))).)).))))))..............((((((.......))))))..((((((-(.....))))))).))))........ ( -30.90)
>DroEre_CAF1 75142 111 + 1
CCAUAGCUACCACAUAUGGCUGUCCUUCCAGUGGAUAAAUAAAGUAUUUAAAUGGAGAGGCAGUCGCAGUUGCUGGCAACGAGGA-CUCUUGGUCCUUGAACCGUAAUCGGC
.....((((.((....((((((((.(((((.((((((.......))))))..))))).))))))))....)).))))..((((((-(.....)))))))..(((....))). ( -36.00)
>DroYak_CAF1 73599 112 + 1
CUUUAGUUAGCAUAUAUAAUUAUCUUUUCAAUGGACAAAUAAAGUGUUUAAAUCAAGAGGCAGUCGCAUAUGCUGGCAACGAGGUCCUUUUGGUCCUCGCACCGCAAUCGGC
.....((((((((((.(.(((..(((((...((((((.......))))))....)))))..))).).))))))))))..(((((.((....)).)))))..(((....))). ( -31.50)
>consensus
CUAUAGUUACCAUAUAUGACCGUCCUUUCAGCGGAUAAAUAUAGUAUUUAAAUUAAGAGGCAGUCACAUAUGCUGGCAACGAGGA_CUCUUGGUCCUUGAACCGCAAUCGGC
.....((((.(((((.((((.((((.......)))).......((.(((......))).)).)))).))))).))))..((((((.(....).))))))............. (-16.96 = -17.52 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:22 2006