Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,624,768 – 5,624,871 |
Length | 103 |
Max. P | 0.653698 |
Location | 5,624,768 – 5,624,871 |
---|---|
Length | 103 |
Sequences | 5 |
Columns | 106 |
Reading direction | forward |
Mean pairwise identity | 90.23 |
Mean single sequence MFE | -21.05 |
Consensus MFE | -15.63 |
Energy contribution | -16.83 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.00 |
Mean z-score | -1.79 |
Structure conservation index | 0.74 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.653698 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5624768 103 + 22407834 UUUUGUCAGCGAAAACAGCAGAAGUAACAUCC---AUCUCUGCCCAUAUUUGAUUACCAUGCAUAUUUGCAAUUAUCACUUUUGCUGAUGACAUUAUAUAAAUUUG ..(..(((((((((...(((((..(.......---)..))))).......((((.....((((....))))...)))).)))))))))..)............... ( -23.10) >DroSec_CAF1 68816 105 + 1 UUUUGUCAGCGAAAACAGCAGAAGUAACGUCCAGCAUCUCUGCCCAUAUUUGAUUACCAUGCAUAU-UGCAAUUAUCACUUUUGCUGAUGACAUUAUAUAAAUUUG ..(..(((((((((...(((((.((........))...))))).......((((.....(((....-.)))...)))).)))))))))..)............... ( -21.50) >DroSim_CAF1 70567 105 + 1 UUUUGUCAGCGAAAACAGCAGAAGUAAUGUCCAGCAUCUCUGCUUAUAUUUGAUUACCAUGCAUAU-UGCAAUUAUCACUUUUGCUGAUGACAUUAUAUAAAUUUG ..(..(((((((((..((((((....(((.....))).))))))......((((.....(((....-.)))...)))).)))))))))..)............... ( -23.60) >DroEre_CAF1 71794 105 + 1 UUUUGUCAGCGAAAACAGCAAAAGGCAUGUCGAACAACUCUGCCCAUAUUUGAUUACCAUGCAUAU-UUCAAUUAUCACUUUUGCUGAUGACAUUAUAUAAAUUUG ...(((((.......((((((((((((((..((.(((............))).))..)))))(((.-......)))..))))))))).)))))............. ( -19.60) >DroYak_CAF1 69951 105 + 1 UUGUGUCAGCGAAAACUGCAGAAGAAACGUCGCACAUCUCUGCACAUAUUUGAUUACCACGCAUAU-UUCAAUUAUCACUUUUGCAGAUGAAACUAUAUUAAUUUG ((((....))))...(((((((((....((.(((......)))))(((.((((.............-.)))).)))..)))))))))................... ( -17.44) >consensus UUUUGUCAGCGAAAACAGCAGAAGUAACGUCCAACAUCUCUGCCCAUAUUUGAUUACCAUGCAUAU_UGCAAUUAUCACUUUUGCUGAUGACAUUAUAUAAAUUUG ..((((((((((((...(((((................))))).......((((.....((((....))))...)))).))))))))))))............... (-15.63 = -16.83 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:20 2006