Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,621,026 – 5,621,120 |
Length | 94 |
Max. P | 0.692534 |
Location | 5,621,026 – 5,621,120 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 80.41 |
Mean single sequence MFE | -24.84 |
Consensus MFE | -15.84 |
Energy contribution | -16.16 |
Covariance contribution | 0.32 |
Combinations/Pair | 1.09 |
Mean z-score | -1.81 |
Structure conservation index | 0.64 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.692534 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5621026 94 + 22407834 UGUCUCUUGAUUGUGUGGGCAGCUCUGGUCAUAAAUUUAAUAUGACACCUGCAGGACGCAGGAGUACACACCCCACCCCACACUCCCCACUCCC ............(((((((........((((((.......)))))).(((((.....)))))..............)))))))........... ( -26.10) >DroSec_CAF1 65065 87 + 1 UGUCUCUUGAUUGUGUGGGCAGCUCUGGUCAUAAAUUUAAUAUGACACCUGCAGGACGCAGGAGUCCACGGCACACACC-------CCACCACC ...........(((((((((.......((((((.......)))))).(((((.....))))).)))))).)))......-------........ ( -24.90) >DroSim_CAF1 66838 87 + 1 UGUCUCUUGAUUGUGUGGGCAGCUCUGGUCAUAAAUUUAAUAUGACACCUGCAGGACGCAGGAGUCCACAGCCCACACC-------CCACCACC ............((((((((.((....((((((.......))))))....)).((((......))))...)))))))).-------........ ( -31.60) >DroYak_CAF1 65997 84 + 1 UGUCUCUUGAUUGUGUGGGCAGCUCUGGUCAUAAAUUUAAUAUGACACCUGCAGGACGCAGGACUCCACUCGGCACUCC-------CCC---CU .......((.(((.(((((........((((((.......)))))).(((((.....)))))..))))).)))))....-------...---.. ( -21.40) >DroAna_CAF1 66564 89 + 1 UGUCUGUUGAUUAUGUGGCCAGUUCUGGUCAUAAAUUUAAUAUGACACCUACAGGAUGCACCACCCGACCUA-----CCAUACUGCCCCCGGCC ((((((((((...((((((((....))))))))...)))))).))))((....)).................-----.......(((...))). ( -20.20) >consensus UGUCUCUUGAUUGUGUGGGCAGCUCUGGUCAUAAAUUUAAUAUGACACCUGCAGGACGCAGGAGUCCACACCCCACACC_______CCACCACC ...((((((.((.((((((((....))((((((.......)))))).)))))).))..)))))).............................. (-15.84 = -16.16 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:17 2006