Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,613,134 – 5,613,236 |
Length | 102 |
Max. P | 0.652008 |
Location | 5,613,134 – 5,613,236 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | reverse |
Mean pairwise identity | 79.74 |
Mean single sequence MFE | -22.74 |
Consensus MFE | -11.68 |
Energy contribution | -13.16 |
Covariance contribution | 1.48 |
Combinations/Pair | 1.30 |
Mean z-score | -2.00 |
Structure conservation index | 0.51 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652008 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5613134 102 - 22407834 AUCGCCGCAAGGCAUUCACAAAUAGAUAUUUUGCGAGCUAGUUAAAUAUGUCAUUAUUUGACAUUAAUAACUCCAUUGCCAUUCGGCGUUUGACGAUUUCCC ...(((....)))...........((....((((((((.(((((...((((((.....))))))...))))).....(((....)))))))).)))..)).. ( -27.00) >DroSec_CAF1 56942 102 - 1 AUUGCCGCGAGGCAUUCACAAAUAGAUAUUUUGCGAGCUAGUUAAAUGUGUCAUUAUUCGACAUUAAUAACUUCAUUGCCAUCCGCCGUUUGACAAUUUCCC ..((((....))))....((((..(.......((((...(((((...(((((.......)))))...)))))...))))......)..)))).......... ( -24.02) >DroSim_CAF1 58762 94 - 1 AUCGCCGCGAGGCAUUCAGAAAUAGAUAUU--------UAGUUAAAUGUGUCAUUAUUCGACAUUAAUAACUCCAUUGUCAUCCGCCGUUUGACGAUUUCCC ...(((....))).....(((((.((((..--------.(((((...(((((.......)))))...)))))....))))......((.....))))))).. ( -21.00) >DroEre_CAF1 59432 86 - 1 UUUGCCGUGAGGCAUUUACAAAUUGAUAUU----------------UGUGUAAUUAUUCGAUAUUAUUAACUUCAUAGUCAUACGGCGAUUGACGCUUUCCC .((((((((.(((...(((((((....)))----------------)))).........((...........))...))).))))))))............. ( -18.10) >DroYak_CAF1 57551 102 - 1 AUUGCCGCGAGGCAUUCAAAAAUAGAUAUUUUGCUAGCUGGUUAAAUGUGUAGUUUUUCGAUAUUAAUAAAUCCAUCGUCAUUCGGCGAUUGAUGAUUUCCC ..((((....)))).(((((((((.((((((.(((....))).)))))).).)))))).)).........(((.((((((....)))))).)))........ ( -23.60) >consensus AUUGCCGCGAGGCAUUCACAAAUAGAUAUUUUGC_AGCUAGUUAAAUGUGUCAUUAUUCGACAUUAAUAACUCCAUUGUCAUCCGGCGUUUGACGAUUUCCC ...(((....)))..........................(((((...(((((.......)))))...)))))..(((((((.........)))))))..... (-11.68 = -13.16 + 1.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:16 2006