Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,608,428 – 5,608,534 |
Length | 106 |
Max. P | 0.967489 |
Location | 5,608,428 – 5,608,534 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 82.41 |
Mean single sequence MFE | -29.07 |
Consensus MFE | -20.82 |
Energy contribution | -21.38 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.18 |
Mean z-score | -2.48 |
Structure conservation index | 0.72 |
SVM decision value | 1.61 |
SVM RNA-class probability | 0.967489 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5608428 106 + 22407834 AG---GGGUGGCCCAACUGUACCGUGAGAAACGGAAAUAAAAGCUAUCAGCAAACUGAACCAGCAUGAG-AAGCAGCUCAAAGGUAAGUAGGGUCAGACCCUAAAAUAUU ((---((.((((((.(((.((((...................(((.((((....))))...))).((((-......))))..))))))).))))))..))))........ ( -32.90) >DroSec_CAF1 52325 105 + 1 GGCGGGGGUGGUCCAACUGUACCGUGAGAAACGGAAAUAAAAGCUAUCAGCAAACUGAACCAGCAUGAAAAAGCAGCUCAAAGG-----AGGGUCAGACCCUAAAAUAUU ...(((..((..((..((...((((.....)))).......((((.((((....))))....((.(....).))))))...)).-----.))..))..)))......... ( -29.40) >DroSim_CAF1 54113 105 + 1 GGCGAUGGUGGCCCAACUGUACCGUGAGAAACGGAAAUAAAAGCUAUCAGCAAACUGAGCCAGCAUGAAAAAGCAGCUCAAAGG-----AGGGUCAGACCCUAAAAUAUU .((..(((((((.........((((.....))))........)))))))))....(((((..((.(....).)).)))))....-----((((.....))))........ ( -26.93) >DroEre_CAF1 52638 88 + 1 -G---GGCUGGCCCAGCUGUACCGUGAGAAACGGAAAUAAAUGCCAUCAGCAAGCUGAACCAGCAUGAA-AGGCGGCUCAAAGUU----AGGG-------------UAUA -.---.(((((..(((((...((((.....)))).......(((.....))))))))..))))).....-.....((((......----.)))-------------)... ( -26.40) >DroYak_CAF1 52730 102 + 1 GG---GGUUGGCCCAGCUGUACCGUGAGAAACGGAAAUAAAAGCUAUCAGCAAACUGAACCGGCAUGGA-AAGCAGCUCAAACUU----UGGGUUAGAGCCUAAAAUAUU .(---((....)))((((((.((((.....))))........(((.((((....))))...))).....-..)))))).....((----(((((....)))))))..... ( -29.70) >consensus GG___GGGUGGCCCAACUGUACCGUGAGAAACGGAAAUAAAAGCUAUCAGCAAACUGAACCAGCAUGAA_AAGCAGCUCAAAGGU____AGGGUCAGACCCUAAAAUAUU .....(((((((((.......((((.....))))........(((.((((....))))....((........))))).............))))))..)))......... (-20.82 = -21.38 + 0.56)
Location | 5,608,428 – 5,608,534 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 82.41 |
Mean single sequence MFE | -25.60 |
Consensus MFE | -17.20 |
Energy contribution | -18.44 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.17 |
Mean z-score | -1.63 |
Structure conservation index | 0.67 |
SVM decision value | -0.00 |
SVM RNA-class probability | 0.532908 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5608428 106 - 22407834 AAUAUUUUAGGGUCUGACCCUACUUACCUUUGAGCUGCUU-CUCAUGCUGGUUCAGUUUGCUGAUAGCUUUUAUUUCCGUUUCUCACGGUACAGUUGGGCCACCC---CU ........((((..((.(((.(((((((..((((..((..-.....((((..((((....))))))))..........))..)))).)))).))).))).)).))---)) ( -28.13) >DroSec_CAF1 52325 105 - 1 AAUAUUUUAGGGUCUGACCCU-----CCUUUGAGCUGCUUUUUCAUGCUGGUUCAGUUUGCUGAUAGCUUUUAUUUCCGUUUCUCACGGUACAGUUGGACCACCCCCGCC ..........((((..((...-----((..((((..((........((((..((((....))))))))..........))..)))).))....))..))))......... ( -24.07) >DroSim_CAF1 54113 105 - 1 AAUAUUUUAGGGUCUGACCCU-----CCUUUGAGCUGCUUUUUCAUGCUGGCUCAGUUUGCUGAUAGCUUUUAUUUCCGUUUCUCACGGUACAGUUGGGCCACCAUCGCC ..........((((..((...-----...(((((((((........)).)))))))...((.....))........((((.....))))....))..))))......... ( -24.90) >DroEre_CAF1 52638 88 - 1 UAUA-------------CCCU----AACUUUGAGCCGCCU-UUCAUGCUGGUUCAGCUUGCUGAUGGCAUUUAUUUCCGUUUCUCACGGUACAGCUGGGCCAGCC---C- ....-------------....----.....((((......-)))).(((((((((((((((.....))).......((((.....))))...)))))))))))).---.- ( -26.50) >DroYak_CAF1 52730 102 - 1 AAUAUUUUAGGCUCUAACCCA----AAGUUUGAGCUGCUU-UCCAUGCCGGUUCAGUUUGCUGAUAGCUUUUAUUUCCGUUUCUCACGGUACAGCUGGGCCAACC---CC .........(((((.(((...----..))).)))))((..-.....)).(((((((((.((.....))........((((.....))))...)))))))))....---.. ( -24.40) >consensus AAUAUUUUAGGGUCUGACCCU____ACCUUUGAGCUGCUU_UUCAUGCUGGUUCAGUUUGCUGAUAGCUUUUAUUUCCGUUUCUCACGGUACAGUUGGGCCACCC___CC ..........((((((((...........(((((((((........)).)))))))...((.....))........((((.....))))....))))))))......... (-17.20 = -18.44 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:12 2006