Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,607,390 – 5,607,501 |
Length | 111 |
Max. P | 0.848301 |
Location | 5,607,390 – 5,607,501 |
---|---|
Length | 111 |
Sequences | 5 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 94.66 |
Mean single sequence MFE | -40.40 |
Consensus MFE | -33.36 |
Energy contribution | -34.28 |
Covariance contribution | 0.92 |
Combinations/Pair | 1.03 |
Mean z-score | -1.68 |
Structure conservation index | 0.83 |
SVM decision value | 0.78 |
SVM RNA-class probability | 0.848301 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5607390 111 + 22407834 CGAAUAAAGUCCUGGGAAAUGGAAGUGGAAACUCCCACUUUUCCAGGGGCAGUGCAGUUGCCGGACAGGAAGCAGACUCGUUUGGCCGAGAAAGGGCUGAAUUGGGUGGCA ........((((((((((((((.(((....))).))).)))))))..(((((.....))))))))).....((..(((((((..(((.......)))..)).))))).)). ( -41.50) >DroSec_CAF1 51263 110 + 1 CGAACG-AGUCCUGGGAAAUGGAAGUGGAAACCCCCGCUUUUCCAGGGGCACUGCAGUUCCCGGACAGGAAGCAGACUCGUUUGGCCGAGAAAGGGCUGAAUUGGGUGGCA ((((((-(((((((((((((((..((....))..))).)))))))))....((((..((((......)))))))))))))))))((((...((........))...)))). ( -42.30) >DroSim_CAF1 53076 110 + 1 CGAACG-AGUCCUGGGAAAUGGAAGUGGAAACCCCCGCUUUUCCAGGGCCACUGCAGUUGCCGGACAGGAAGCAGACUCGUUUGGCCGAGAAAGGGCUGAAUUGGGUGGCA ......-...((((((((((((..((....))..))).)))))))))(((.((((.....((.....))..))))(((((((..(((.......)))..)).)))))))). ( -41.80) >DroEre_CAF1 51565 110 + 1 CGAAUG-AGUCCUGGGAAAUGGAAGUGGAAAACCCCUCCUUUCCGGGGGCAGUGCAGUUGCCGGACAGGAAGCAGACUCGUUUGGCCGAGAAAGGGCUGAAUUGGGUGGCA ......-.(((((.(((((.(((.(.((....))).)))))))).)))))..(((.(((.((.....)).)))..(((((((..(((.......)))..)).))))).))) ( -39.30) >DroYak_CAF1 51646 110 + 1 CGAAUG-AGUCCUGGGAAAUGGAAGUGGAAAGCCCCUCUUUUCCAUGGGCAGUGCAGUUGCCGGACAGGAAGCAGACUCGUUUGGCCGAGAAAGGGCUGAAUUGGGUGGCA ......-..(((((....(((((((.((......))...))))))).(((((.....)))))...))))).((..(((((((..(((.......)))..)).))))).)). ( -37.10) >consensus CGAAUG_AGUCCUGGGAAAUGGAAGUGGAAACCCCCGCUUUUCCAGGGGCAGUGCAGUUGCCGGACAGGAAGCAGACUCGUUUGGCCGAGAAAGGGCUGAAUUGGGUGGCA ........(((((.(((....(((((((......)))))))))).)))))..(((.(((.((.....)).)))..(((((((..(((.......)))..)).))))).))) (-33.36 = -34.28 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:10 2006