Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,604,683 – 5,604,776 |
Length | 93 |
Max. P | 0.511222 |
Location | 5,604,683 – 5,604,776 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 71.60 |
Mean single sequence MFE | -26.50 |
Consensus MFE | -13.80 |
Energy contribution | -13.38 |
Covariance contribution | -0.41 |
Combinations/Pair | 1.29 |
Mean z-score | -1.46 |
Structure conservation index | 0.52 |
SVM decision value | -0.04 |
SVM RNA-class probability | 0.511222 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5604683 93 - 22407834 UCCUAUCGUUGCGUGGCCAAGAAUUCCCUGGGCGACACGGACGGCACAAUUAAGCUGUAUCGUAAGUAGUU----CUCAGAACCCAUUAC--------GCUUAUA ..........((((.(((.((......)).))).))..(((((((........))))).))((((...(((----(...))))...))))--------))..... ( -21.20) >DroVir_CAF1 72041 98 - 1 GCAUAUCGCUGUGUGGCCAAGAACUCACUGGGCGAUACAGAUGGCACCAUCAAGCUAUAUAGUGAGUAGAG----CUCAUAACUAAAUACACU---UUAGGCGUA ((((((.(((((((.(((.((......)).))).)))).((((....)))).))).)))).(((((.....----)))))..(((((.....)---))))))... ( -28.40) >DroPse_CAF1 62940 90 - 1 GCCUAUAGAUGUGUGGCCAAGAACUCCCUUGGCGAUACGGAUGGUACCAUCAAGCUGUACAGUGAGUAUAA----CU---UACCCGUUGA--------UGGGAUA (((.((...(((((.((((((......)))))).))))).))))).(((((((...(((.(((.......)----))---)))...))))--------))).... ( -29.80) >DroGri_CAF1 57580 100 - 1 GCCUAUCGUUGUGUGGCCAAGAACUCACUGGGCGAUACAGAUGGAACCAUUAAGCUUUACAGUAAGUAGAG----CUCUGGACUGAGUAUCGUUGUUUAUG-ACA ..(((((..(((((.(((.((......)).))).))))))))))..(((...((((((((.....))))))----)).)))..........(((......)-)). ( -28.40) >DroWil_CAF1 74365 97 - 1 GCUUAUCGUUGUGUGGCCAAGAAUUCAUUGGGCGAUACAGAUGGCACCAUUAAACUGUAUAGUAAGUAUAUAAGAUUGAGAAACGAUAAU--------AGCCACA ((((((((((((((.(((............))).)))).((((....))))....((((((.....)))))).........)))))))..--------))).... ( -20.40) >DroPer_CAF1 62981 90 - 1 GCCUAUAGAUGUGUGGCCAAGAACUCCCUUGGCGAUACGGAUGGCACCAUCAAGCUGUACAGUGAGUAUAA----CU---AACCCGUUGA--------UGGGAUA (((.((...(((((.((((((......)))))).))))).))))).((((((((.(((((.....))))).----))---.......)))--------))).... ( -30.81) >consensus GCCUAUCGUUGUGUGGCCAAGAACUCACUGGGCGAUACAGAUGGCACCAUCAAGCUGUACAGUAAGUAGAA____CUCAGAACCCAUUAA________AGGCAUA .........(((((.(((.((......)).))).)))))((((....))))..(((........)))...................................... (-13.80 = -13.38 + -0.41)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:09 2006