Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,595,605 – 5,595,705 |
Length | 100 |
Max. P | 0.742320 |
Location | 5,595,605 – 5,595,705 |
---|---|
Length | 100 |
Sequences | 3 |
Columns | 105 |
Reading direction | reverse |
Mean pairwise identity | 77.12 |
Mean single sequence MFE | -18.54 |
Consensus MFE | -13.63 |
Energy contribution | -13.97 |
Covariance contribution | 0.34 |
Combinations/Pair | 1.18 |
Mean z-score | -1.44 |
Structure conservation index | 0.73 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.742320 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5595605 100 - 22407834 AGAUAUAGAUAUGAAAAACAAGAGAUAAAGAGGUAAAUACUCUUGUCGAGAUUGCUGAUCAGCGCUACCUGGUGGCGGUUUCCAGACGCCUUAAAA-----CAAA .....................(((...(((((.......)))))((((((((((((.(((((......))))))))))))))..)))..)))....-----.... ( -21.40) >DroSec_CAF1 39540 98 - 1 AAAUAAAGAUAUAUAAAAAAAGG----AA---GAAAAUACUCUUGUCGAGAUUGCUCACUAGCGCUACCUGGUGGCAGUUUCCAGACCCUUAAAAGAAAAAAAAA ...................((((----((---((......))))(((((((((((.((((((......))))))))))))))..))))))).............. ( -23.40) >DroSim_CAF1 41293 96 - 1 AGACAAAGAUAUGAAAAACAAAA----AAGAAAUAACUACUCUUGUCGAGAUUGCUCACUAGCGCUACCCGGUGGAAGUUUCCAGACCCUUAAAAU-----CAAA .(((((.((..............----.............)))))))((((((..((((..(......)..)))).))))))..............-----.... ( -10.83) >consensus AGAUAAAGAUAUGAAAAACAAGA____AAGA_GUAAAUACUCUUGUCGAGAUUGCUCACUAGCGCUACCUGGUGGCAGUUUCCAGACCCUUAAAAA_____CAAA ............................................(((((((((((.((((((......))))))))))))))..))).................. (-13.63 = -13.97 + 0.34)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:08 2006