Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,587,426 – 5,587,538 |
Length | 112 |
Max. P | 0.852192 |
Location | 5,587,426 – 5,587,538 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 79.36 |
Mean single sequence MFE | -41.38 |
Consensus MFE | -28.15 |
Energy contribution | -29.27 |
Covariance contribution | 1.12 |
Combinations/Pair | 1.22 |
Mean z-score | -1.76 |
Structure conservation index | 0.68 |
SVM decision value | 0.79 |
SVM RNA-class probability | 0.852192 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5587426 112 - 22407834 AGGGUCGUUGAGGACUGGUGGCUAAAAAAGCAGAGUCAGCAGCAGGCGCAGCGCGAGGAGAAGCGACGCGCCAUGUUGUCCAAGGCCUUGAAAGAGGAA------CAGCGCCGGCAAC ..((.(((((.((((.(.(((((..........))))).)(((((((((..(((........)))..))))).))))))))....((((....))))..------)))))))...... ( -44.20) >DroSec_CAF1 31461 112 - 1 AGGGUCGUAGAGGACUGGUGGCUAAAGAAGCAGCGUCAGCAGCAGGCGCAGCGCGAGGAGAAGCGACGCGCCAUGUUGUCCAAGGCCUUGAAAGAGGAA------CAGCGCCGGCAAA ..((((......))))(.((((.......((.((....)).)).(((((..(((........)))..)))))..(((((......((((....)))).)------)))))))).)... ( -40.00) >DroSim_CAF1 33166 112 - 1 AGGGUCGUAGAGGACUGGUGGCUAAAGAAGCAGCGUCAGCAGCAGGCGCAGCGCGAGGAGAAGCGACGCGCCAUGUUGUCCAAGGCCUUGAAAGAGGAA------CAGCGCCGGCAAA ..((((......))))(.((((.......((.((....)).)).(((((..(((........)))..)))))..(((((......((((....)))).)------)))))))).)... ( -40.00) >DroEre_CAF1 31474 112 - 1 AGAGUCGUGGAGGACUGGUGGCUCAGGAAGCAGGGUCAGCAGCAGGCGCAACGCGAGGAGAAGCGACGCGCCAUGUUGUCCAAGGUCCUGGAGGAGGAA------CAGCGCCGGCAGG ..............(((.((((((((((.....((.(((((...(((((..(((........)))..))))).))))).))....)))))).(......------)...)))).))). ( -44.60) >DroYak_CAF1 31791 112 - 1 AGGGUCGUGGAGGACUGGUGGCUAAAGAAGCAGCGUCAGCAGCAGGCGCAGCGCGAGGAGAGGCGACGCGCCAUGUUGUCCAAGGCCUUCGAGGAGGAA------CAGCGCCGGCAAC ((((((.((((.(((((((.(((.....))).(((((.((.((....)).))((........))))))))))).))).)))).))))))...((.(...------...).))...... ( -40.30) >DroPer_CAF1 41815 112 - 1 CUGGAGCUUGAAAACUGGCGUCUGAAGAAGAUCCAGAUGCAGAGGUCCAAGCGCCAGGAGGAACAACUGGCGAAGAU---UAAG---CACGAAGAGGAUCUAUUCCAUCGCCAGAGAC ((((.(((((...(((.(((((((.........)))))))...))).))))).)))).........(((((((.(..---....---).......(((.....))).))))))).... ( -39.20) >consensus AGGGUCGUAGAGGACUGGUGGCUAAAGAAGCAGCGUCAGCAGCAGGCGCAGCGCGAGGAGAAGCGACGCGCCAUGUUGUCCAAGGCCUUGAAAGAGGAA______CAGCGCCGGCAAC ..............(((((((((.....))).......(((((((((((..(((........)))..))))).))))))......((((....))))...........)))))).... (-28.15 = -29.27 + 1.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:07 2006