Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 610,972 – 611,077 |
Length | 105 |
Max. P | 0.926168 |
Location | 610,972 – 611,077 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 88.06 |
Mean single sequence MFE | -28.47 |
Consensus MFE | -24.40 |
Energy contribution | -24.65 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -2.01 |
Structure conservation index | 0.86 |
SVM decision value | 1.17 |
SVM RNA-class probability | 0.926168 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 610972 105 + 22407834 UGUCGCCAGCAAUCAAAAGCGGAAUAUCCGCGUCCCCUUGUAAUUAGGGGAGAGCAGAUACCAAAGAAUCCGAGCGGCAGCUUUAGUUUCAGAAGAAACAAAAAA--------------- (((((((.((........((((.....)))).((((((.......))))))..)).(((........))).).))))))......(((((....)))))......--------------- ( -32.60) >DroSec_CAF1 417 105 + 1 UGUCGCCAGCAAUCAAAAGCGGAAUAUCCGCGUCCCCUUGUAAUUAGGGGAGAGCAGAUACCAAAGAAUCCGAGCGGCAGCUUUAGUUUCAGAAGAACCAAAAAA--------------- (((((((.((........((((.....)))).((((((.......))))))..)).(((........))).).)))))).((((.......))))..........--------------- ( -28.60) >DroEre_CAF1 2012 115 + 1 UGUCGCCAGCAAUCAAAAGCGGAAUAUCCGCGUCCACUUGUAAUUAGGGGAGAGCAAAUACCAAAGAACCCAAGCGGCAGCUUUAGUUUCAGAAGAACCAAAAAGUG----GA-GAAGAA ..((.(((((........((((.....)))).(((.((((....)))))))..))..........((((..((((....))))..))))................))----).-)).... ( -24.70) >DroYak_CAF1 2031 120 + 1 UGUCGCCAGCAAUCAAAAGCGGAAUAUCCGCGUCCCCUUGUAAUUAGGGGAGAGCAAAUACCAAAGAACCCAAGCGGCAGCUUUAGUUUCAGAACAACCAAAAAAGAACCAAAGAAAGAA ((((((..((........((((.....)))).((((((.......))))))..))..........(....)..)))))).((((.((((................)))).))))...... ( -27.99) >consensus UGUCGCCAGCAAUCAAAAGCGGAAUAUCCGCGUCCCCUUGUAAUUAGGGGAGAGCAAAUACCAAAGAACCCAAGCGGCAGCUUUAGUUUCAGAAGAACCAAAAAA_______________ ((((((..((........((((.....)))).((((((.......))))))..))..........(....)..))))))......................................... (-24.40 = -24.65 + 0.25)
Location | 610,972 – 611,077 |
---|---|
Length | 105 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 88.06 |
Mean single sequence MFE | -31.07 |
Consensus MFE | -27.24 |
Energy contribution | -27.23 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.06 |
Mean z-score | -1.89 |
Structure conservation index | 0.88 |
SVM decision value | 1.06 |
SVM RNA-class probability | 0.907819 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 610972 105 - 22407834 ---------------UUUUUUGUUUCUUCUGAAACUAAAGCUGCCGCUCGGAUUCUUUGGUAUCUGCUCUCCCCUAAUUACAAGGGGACGCGGAUAUUCCGCUUUUGAUUGCUGGCGACA ---------------......(((((....)))))....(.(((((((((((..(...(((((((((..((((((.......)))))).)))))))))..)..)))))..)).)))).). ( -33.30) >DroSec_CAF1 417 105 - 1 ---------------UUUUUUGGUUCUUCUGAAACUAAAGCUGCCGCUCGGAUUCUUUGGUAUCUGCUCUCCCCUAAUUACAAGGGGACGCGGAUAUUCCGCUUUUGAUUGCUGGCGACA ---------------...((((((((....).)))))))(.(((((((((((..(...(((((((((..((((((.......)))))).)))))))))..)..)))))..)).)))).). ( -32.80) >DroEre_CAF1 2012 115 - 1 UUCUUC-UC----CACUUUUUGGUUCUUCUGAAACUAAAGCUGCCGCUUGGGUUCUUUGGUAUUUGCUCUCCCCUAAUUACAAGUGGACGCGGAUAUUCCGCUUUUGAUUGCUGGCGACA ......-((----(((((.(((((((....)))(((((((..(((.....))).)))))))............))))....)))))))(((((.....))((........))..)))... ( -26.60) >DroYak_CAF1 2031 120 - 1 UUCUUUCUUUGGUUCUUUUUUGGUUGUUCUGAAACUAAAGCUGCCGCUUGGGUUCUUUGGUAUUUGCUCUCCCCUAAUUACAAGGGGACGCGGAUAUUCCGCUUUUGAUUGCUGGCGACA ......................((((((.....(((((((..(((.....))).)))))))....((..((((((.......)))))).((((.....))))........)).)))))). ( -31.60) >consensus _______________UUUUUUGGUUCUUCUGAAACUAAAGCUGCCGCUCGGAUUCUUUGGUAUCUGCUCUCCCCUAAUUACAAGGGGACGCGGAUAUUCCGCUUUUGAUUGCUGGCGACA ..................(((((((.......)))))))(.((((....(((.......((((((((..((((((.......)))))).)))))))))))((........)).)))).). (-27.24 = -27.23 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:23 2006