Locus 2079

Sequence ID 2L_DroMel_CAF1
Location 5,586,447 – 5,586,542
Length 95
Max. P 0.912469
window3364

overview

Window 4

Location 5,586,447 – 5,586,542
Length 95
Sequences 6
Columns 100
Reading direction forward
Mean pairwise identity 83.80
Mean single sequence MFE -36.78
Consensus MFE -24.63
Energy contribution -24.38
Covariance contribution -0.25
Combinations/Pair 1.12
Mean z-score -3.91
Structure conservation index 0.67
SVM decision value 1.08
SVM RNA-class probability 0.912469
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5586447 95 + 22407834
--GGGAGCUUGGAGCAAGC-CGAGUGCUG--UGGAAACUGUGCAAAUGAACUUUAGGCCUUUGGCUUUGUUUGUUUGCAUUUCGGUUUCCCACUCCCAAA
--((((((((((......)-))))...((--.((((((((((((((..(((...(((((...))))).)))..))))))...)))))))))))))))... ( -41.80)
>DroVir_CAF1 43649 98 + 1
UGCGGAGCGUAGGGCAAGCGCAAGCGGUU--UGGAAAUUGUGCAAAUGAACUUUAGGCCUUUGGCUUAUUUUGUUUGCAUUUCGGUUUUGCUUUGGCAAA
(((.(((.(((((((..((....))....--..(((...(((((((..((...((((((...)))))).))..)))))))))).)))))))))).))).. ( -33.20)
>DroSec_CAF1 30515 94 + 1
---GGAGCUUGGAGCAAGC-CGAGUGCUG--UGGAAACUGUGCAAAUGAACUUUAGGCCUUUGGCUUUGUUUGUUUGUAUUUCGGUUUCCCACACCCAAA
---((.((((((......)-)))))..((--(((((((((((((((..(((...(((((...))))).)))..))))))...)))))).))))).))... ( -35.70)
>DroSim_CAF1 32219 94 + 1
---GAAGCUUGGAGCCAGC-CGAGUGCUG--UGGAAACUGUGCAAAUGAACUUUAGGCCUUUGGCUUUGUUUGUUUGUAUUUCGGUUUCCCACACCCAAA
---...((((((......)-)))))..((--(((((((((((((((..(((...(((((...))))).)))..))))))...)))))).)))))...... ( -33.90)
>DroEre_CAF1 30514 93 + 1
---GGAGCUUGGAGCAAGC-CGAGUG---CUGGGAAACUGUGCAAAUGAACUUUAGGCCUUUGGCUUUGUUUGUUUGUAUUUCGGUUUCCCACUCCCACU
---(((((((((......)-))))..---.((((((((((((((((..(((...(((((...))))).)))..))))))...)))))))))))))).... ( -39.40)
>DroAna_CAF1 32423 92 + 1
---GGAGCUGCGAGCUGGC-CGAAAGCAG---GGAAAUUGUGCAAAUGAACUUUAGGCCUUUGGCUUUGUUUGUUUGUAUUUCGGUUUCCUCGCCUCAU-
---.(((..(((((..(((-(((((((((---.....))))(((((..(((...(((((...))))).)))..))))).))))))))..))))))))..- ( -36.70)
>consensus
___GGAGCUUGGAGCAAGC_CGAGUGCUG__UGGAAACUGUGCAAAUGAACUUUAGGCCUUUGGCUUUGUUUGUUUGUAUUUCGGUUUCCCACUCCCAAA
......((.....)).................((((((((((((((..(((...(((((...))))).)))..))))))...)))))))).......... (-24.63 = -24.38 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:06 2006