Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,583,349 – 5,583,444 |
Length | 95 |
Max. P | 0.821321 |
Location | 5,583,349 – 5,583,444 |
---|---|
Length | 95 |
Sequences | 4 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 74.04 |
Mean single sequence MFE | -24.75 |
Consensus MFE | -11.26 |
Energy contribution | -12.33 |
Covariance contribution | 1.06 |
Combinations/Pair | 1.08 |
Mean z-score | -2.39 |
Structure conservation index | 0.46 |
SVM decision value | 0.68 |
SVM RNA-class probability | 0.821321 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5583349 95 - 22407834 --UACGCAAAAAAGCAUAUUAAAGUUAAA------------UUUGCU----GUAAAACCGGAAAUACCCUAUGAAAAGGGUAUGGAAGUCCGGAAGUUUGACUAAUAGUUCCA --...((......)).......(((((((------------(((...----......(((((.(((((((......))))))).....))))))))))))))).......... ( -24.60) >DroSec_CAF1 27378 95 - 1 --UACUCAAAGUAUCAUAUUAAAGUUAAA------------GUUGCU----GACUAACCGGAAAUACCCUGUGAAAAGGGUAUGGAAAUCCGGAAGUUUGACUAAUAGUUCCA --...(((((.(..........(((((..------------.....)----))))..(((((.(((((((......))))))).....))))).).)))))............ ( -22.40) >DroSim_CAF1 29038 95 - 1 --UACUCAAAGAAGCACAUUAAAGUUAAA------------GUUGCU----GUCUAACCGGAAAUACCCUGUGAAAAGGGUAUGGAAAUCCGGAAGUUUGACUUAUGGUUCCA --........(.(((.(((..((((((((------------.((...----......(((((.(((((((......))))))).....))))))).)))))))))))))).). ( -24.50) >DroYak_CAF1 27458 109 - 1 AUUGGGAAAAGCAGCCUAUUAGAGUCAUAUCUGGAACAUAAGUUGCUGGGUGUAUAAACGUAACUACCCUCUGAAAAGAGUGCGCACAUCCAGAAGUCU----AAUAGUUCCA ....((((.......((((((((.(....((((((.....((((((...((......))))))))...((((....))))........))))))).)))----))))))))). ( -27.51) >consensus __UACGCAAAGAAGCAUAUUAAAGUUAAA____________GUUGCU____GUAUAACCGGAAAUACCCUGUGAAAAGGGUAUGGAAAUCCGGAAGUUUGACUAAUAGUUCCA .........................................................(((((.(((((((......))))))).....))))).................... (-11.26 = -12.33 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:05 2006