Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,579,853 – 5,579,970 |
Length | 117 |
Max. P | 0.813037 |
Location | 5,579,853 – 5,579,970 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 117 |
Reading direction | forward |
Mean pairwise identity | 79.49 |
Mean single sequence MFE | -50.19 |
Consensus MFE | -30.15 |
Energy contribution | -30.35 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.39 |
Mean z-score | -1.98 |
Structure conservation index | 0.60 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.813037 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5579853 117 + 22407834 UUCCGCCUGCGAGCGGCGGGCGGCCUUCUCCUCCUGGCGCCGCCGCUCGGCAUUCCGCUGCUCGAGGCGACGCUGUUCGAGCAGCCUAAGCUUGUGCAGCUCCCACUCCUGCAGGUG ...(((((((((((((((((((.((..........))))))(((....)))....))))))))..((.((.(((((.(((((.......))))).)))))))))......))))))) ( -60.90) >DroPse_CAF1 31540 117 + 1 AUCCGCUUUCUUGAGGCGCAAAAGGUUCUCUUGAUGGAGCUUUUGAGCCUCCUUUUGCUGCUGCUGACGACGCUUCUCGGCCUGCUUGACUUUUUCCAUCUCCCACUCCUGCAGACG ....((......(((((.((((((.(((.......))).)))))).))))).....))....(((((.((....)))))))((((..((.................))..))))... ( -30.03) >DroSec_CAF1 23941 117 + 1 UUCCGCCUGCGAGCGGCGGGCGGCCUUCUGCUCCUGGCGCCGCCGCUCGGCAUUCCGCUGCUCGAGGCGACGCUGUUCGAACAGCCUCAGCUUGUGCAGCUCCCACUCCUGCAGGUG ...((((((((((((((((.((.((..........)))))))))))))((......(((((.((((..((.(((((....))))).))..)))).))))).......)).))))))) ( -59.32) >DroSim_CAF1 25582 117 + 1 UUCCGCCUGCGAGCGGCGGGCGGCCUGCUCCUCCUGGCGCCGCCGCUCGGCAUUCCGCUGCUCGAGGCGACGCUGUUCGAGCAGCCUCAACUUGUGCAACUCCCACUCCUGCAGGUG ...(((((((((((((((((((((..((.((....)).)).)))))))((....)))))))))(((((...(((.....))).)))))......................))))))) ( -57.80) >DroEre_CAF1 23914 117 + 1 CUCCGCCUGCGACCGGCGAACGGCCUUCUCCUCCAGACGCCGCCGCUCGGCGUUUCGCUGCUCCUGGCGGCGCUGUUCCAGCUGCCUCAGCUUCUGCAUCUCCCACUCCUGCAGGUG ...(((((((((.(((((((((((..........((((((((.....)))))))).(((((.....))))))))))))..))))..)).((....)).............))))))) ( -46.90) >DroYak_CAF1 23812 117 + 1 CUCCGCCUGCGUCCGGCGAGCGGCCUUCUCCGCCUGACGCCGCCGCUCGGCGUUGCGCUCCUCCAGACGUCGCUGUUCGAGGAGCCUCAUCUUCUGCAUCUCCCACUCCUGCAGGUG ...((((((((((.((((.(((((..((.......)).))))))))).))).....((((((((((......)))...))))))).........................))))))) ( -46.20) >consensus UUCCGCCUGCGAGCGGCGGGCGGCCUUCUCCUCCUGGCGCCGCCGCUCGGCAUUCCGCUGCUCCAGGCGACGCUGUUCGAGCAGCCUCAGCUUGUGCAUCUCCCACUCCUGCAGGUG ...(((((((....(.((((((((....((.....))....)))))))).).....(((((((...(((....)))..))))))).........................))))))) (-30.15 = -30.35 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:19:00 2006