Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,579,214 – 5,579,327 |
Length | 113 |
Max. P | 0.612658 |
Location | 5,579,214 – 5,579,327 |
---|---|
Length | 113 |
Sequences | 4 |
Columns | 116 |
Reading direction | forward |
Mean pairwise identity | 82.92 |
Mean single sequence MFE | -28.85 |
Consensus MFE | -17.56 |
Energy contribution | -17.12 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.32 |
Mean z-score | -1.92 |
Structure conservation index | 0.61 |
SVM decision value | 0.16 |
SVM RNA-class probability | 0.612658 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5579214 113 + 22407834 GAACACUUUGAGACUGAAUAUAGACAUAU-AUCGCCUAGACGGUCAAAUUGGAUAUAUAUGAUUUAUAGCAUUUGCUAAUGAUGAUG--AGCAUGUGUACCGUCGGGGGCAUGCAA ...............((.((((....)))-)))((((.(((((((......))((((((((.(((((..((((....))))...)))--)))))))))))))))..))))...... ( -26.50) >DroSec_CAF1 23291 115 + 1 UAACACCUUGUGACUGAAUAUAGGCAUAUUAAUGCCUAGACGGUCAAAUAGGAUAUU-UUGAUUUAUAGCAUUUGCUAAUGAUUAUGGUAGCAUGUGUACCAUCGGGAGCAUGCAA .....(((..((((((....(((((((....)))))))..))))))...))).(((.-.(((((..((((....))))..)))))..)))((((((...((....)).)))))).. ( -38.20) >DroSim_CAF1 24908 115 + 1 UAACACCUUGUGACUGAAUAUAGACAUAUUAUUGCCUAGACGGUCAAAUUGGAUAUU-UUGAUUUAUAGCAUUUGCUAAUGAUGUUGAUAGCAUGUGUACCAUCGGAGGCAUGCAA (((((((...((((((....(((.((......)).)))..))))))....)).....-........((((....))))....)))))...((((((.(.((...))).)))))).. ( -27.20) >DroEre_CAF1 23272 109 + 1 UGACAACUUGUGGGUGAAUAUAGACAUA---UUGCCUAGACAAUUGAAAUGGAUGU--UUGAUGUAUAGCAUUUGUUAAUGAUGAUGA--GCAUGUGUUCUAUGGGGAACAUGCAA ...(((.((((((((.(((((....)))---))))))..))))))).((..(((((--(........))))))..))...........--((((((.(((....))).)))))).. ( -23.50) >consensus UAACACCUUGUGACUGAAUAUAGACAUAU_AUUGCCUAGACGGUCAAAUUGGAUAUU_UUGAUUUAUAGCAUUUGCUAAUGAUGAUGA_AGCAUGUGUACCAUCGGGAGCAUGCAA .....((...((((((....(((.((......)).)))..))))))....))..............((((....))))............((((((...((...))..)))))).. (-17.56 = -17.12 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:59 2006