Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,578,166 – 5,578,286 |
Length | 120 |
Max. P | 0.999946 |
Location | 5,578,166 – 5,578,286 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 92.33 |
Mean single sequence MFE | -43.26 |
Consensus MFE | -34.38 |
Energy contribution | -36.78 |
Covariance contribution | 2.40 |
Combinations/Pair | 1.00 |
Mean z-score | -2.79 |
Structure conservation index | 0.79 |
SVM decision value | 2.28 |
SVM RNA-class probability | 0.991684 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5578166 120 + 22407834 UAUGUUUGCUUGUUUUUCGACGGCAACACGCGCGACGAUGACGUCGGAGUGCAGCCUGCCUGGAAGCCGGAAAAUUCGGGAAAUUCAACCGGCUAACCAGCAGAAAACAAGCUGGCAAAU ..(((..((((((((((....(((..(((.(.(((((....)))))).)))..)))(((.(((.((((((..((((.....))))...))))))..))))))))))))))))..)))... ( -46.30) >DroSec_CAF1 22168 117 + 1 UAUGUUUGCUUGUUUUUCGACGGCAACACGUGCGACGAUGACGUCGGAGUGCAGCCUGCCUGGGAGCCGGAAAAUUCGGGAAAUUCAACCGGCUAACCA---GAAAACAAGCUGGCAAAU ..(((..(((((((((.....(((..(((.(.(((((....))))).))))..)))...((((.((((((..((((.....))))...))))))..)))---))))))))))..)))... ( -44.80) >DroSim_CAF1 23819 120 + 1 UAUGUUUGCUUGUUUUUCGACGGCAACACGCGCGACGAUGACGUCGGAGUGCAGCCUGCCUGGGAGCCGGAAAAUUCGGGAAAUUCAACCGGCUAACCAGCAGAAAACAAGCUGGCAAAU ..(((..((((((((((....(((..(((.(.(((((....)))))).)))..)))(((.(((.((((((..((((.....))))...))))))..))))))))))))))))..)))... ( -47.00) >DroEre_CAF1 22095 113 + 1 UACGGUUGCUUGUUUUUCGAUGGCAACACGCGCGACGCCG-------AGUAGAACCUGCCUGGGAGCCGGAAAAUUCGGGAAAUUCAACCGGCUAACCAGCAGAAAACAAGCUGGCAAAU ....(((((((((((((((.((....)).(((...)))))-------).......((((.(((.((((((..((((.....))))...))))))..)))))))))))))))).))).... ( -35.30) >DroYak_CAF1 22007 120 + 1 UAUGUUUGCUUGUUUUUCGAGGGCAACACGCGCGACGAUGACGUCGUAGUAGAACCUGCCUGGGAGCCGGAAAAUUCGGGAAAUUCAACCGGCUAACCAGCAGAAAACAAGCUGGCAAAU ..(((..(((((((((((...(....)((..((((((....)))))).)).))..((((.(((.((((((..((((.....))))...))))))..))))))))))))))))..)))... ( -42.90) >consensus UAUGUUUGCUUGUUUUUCGACGGCAACACGCGCGACGAUGACGUCGGAGUGCAGCCUGCCUGGGAGCCGGAAAAUUCGGGAAAUUCAACCGGCUAACCAGCAGAAAACAAGCUGGCAAAU ..((((.((((((((((....(((..(((...(((((....)))))..)))..)))...((((.((((((..((((.....))))...))))))..))))..)))))))))).))))... (-34.38 = -36.78 + 2.40)
Location | 5,578,166 – 5,578,286 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 92.33 |
Mean single sequence MFE | -44.44 |
Consensus MFE | -39.58 |
Energy contribution | -40.30 |
Covariance contribution | 0.72 |
Combinations/Pair | 1.06 |
Mean z-score | -3.46 |
Structure conservation index | 0.89 |
SVM decision value | 4.75 |
SVM RNA-class probability | 0.999946 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5578166 120 - 22407834 AUUUGCCAGCUUGUUUUCUGCUGGUUAGCCGGUUGAAUUUCCCGAAUUUUCCGGCUUCCAGGCAGGCUGCACUCCGACGUCAUCGUCGCGCGUGUUGCCGUCGAAAAACAAGCAAACAUA ........((((((((((((((((..((((((..((((((...)))))).)))))).))).)))(((.((((.((((((....))))).).)))).)))...).)))))))))....... ( -49.30) >DroSec_CAF1 22168 117 - 1 AUUUGCCAGCUUGUUUUC---UGGUUAGCCGGUUGAAUUUCCCGAAUUUUCCGGCUCCCAGGCAGGCUGCACUCCGACGUCAUCGUCGCACGUGUUGCCGUCGAAAAACAAGCAAACAUA ........((((((((((---(((..((((((..((((((...)))))).)))))).))))...(((.((((..(((((....)))))...)))).))).....)))))))))....... ( -45.60) >DroSim_CAF1 23819 120 - 1 AUUUGCCAGCUUGUUUUCUGCUGGUUAGCCGGUUGAAUUUCCCGAAUUUUCCGGCUCCCAGGCAGGCUGCACUCCGACGUCAUCGUCGCGCGUGUUGCCGUCGAAAAACAAGCAAACAUA ........((((((((((((((((..((((((..((((((...)))))).)))))).))).)))(((.((((.((((((....))))).).)))).)))...).)))))))))....... ( -48.30) >DroEre_CAF1 22095 113 - 1 AUUUGCCAGCUUGUUUUCUGCUGGUUAGCCGGUUGAAUUUCCCGAAUUUUCCGGCUCCCAGGCAGGUUCUACU-------CGGCGUCGCGCGUGUUGCCAUCGAAAAACAAGCAACCGUA ........((((((((((((((((..((((((..((((((...)))))).)))))).))).))))........-------.((((.((....)).)))).....)))))))))....... ( -38.40) >DroYak_CAF1 22007 120 - 1 AUUUGCCAGCUUGUUUUCUGCUGGUUAGCCGGUUGAAUUUCCCGAAUUUUCCGGCUCCCAGGCAGGUUCUACUACGACGUCAUCGUCGCGCGUGUUGCCCUCGAAAAACAAGCAAACAUA ........((((((((((((((((..((((((..((((((...)))))).)))))).))).)))(((..(((..(((((....)))))...)))..)))...).)))))))))....... ( -40.60) >consensus AUUUGCCAGCUUGUUUUCUGCUGGUUAGCCGGUUGAAUUUCCCGAAUUUUCCGGCUCCCAGGCAGGCUGCACUCCGACGUCAUCGUCGCGCGUGUUGCCGUCGAAAAACAAGCAAACAUA ........(((((((((...((((..((((((..((((((...)))))).)))))).))))...(((..(((..(((((....)))))...)))..))).....)))))))))....... (-39.58 = -40.30 + 0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:54 2006