Locus 2072

Sequence ID 2L_DroMel_CAF1
Location 5,577,607 – 5,577,725
Length 118
Max. P 0.869556
window3350

overview

Window 0

Location 5,577,607 – 5,577,725
Length 118
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 85.98
Mean single sequence MFE -33.40
Consensus MFE -23.40
Energy contribution -24.08
Covariance contribution 0.68
Combinations/Pair 1.17
Mean z-score -2.34
Structure conservation index 0.70
SVM decision value 0.86
SVM RNA-class probability 0.869556
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5577607 118 - 22407834
UGCUCUUUUACACACACAUGCACAUCGAAAAGAGCAAAUUUCUCUUGGUUGAAAGGGAUUU-UUUGCUGGUCGAAAUAUCCUCGUUUAAGUUAACAGAAGAGGUGUGGUGAAAAAGUCA
.(((.((((((.(((((.......((((....((((((..((((((......))))))...-))))))..))))......(((.(((........))).)))))))))))))).))).. ( -32.40)
>DroSec_CAF1 21619 118 - 1
CGCUCUUUUACACACACUUGCACACUGAAUAGAGCGAAUUUCUCUUGGUUGAAAGGGAUUU-UUCGCUGGUCGAAAUAUCCUCGUUUCAGUUAACAGAAGAGGUGUGGUGAAAAAGUCA
.(((.((((((.(((((((((.(........).))...(((((.((..(((((((((((.(-((((.....))))).)))))..))))))..)).)))))))))))))))))).))).. ( -35.50)
>DroSim_CAF1 23263 118 - 1
CGCUCUUUUACACACACUUGCACACUGAAUAGAGCAAAUUUCUCUUGGUUGAAAGGGAUUU-UUUGCUGGUCGAAAUAUCCUCGUUUCAGUUAACAGAAGAGGUGUGGUGAAAAAGUCA
.(((.((((((.(((((((((.(........).))...(((((.((..(((((((((((.(-((((.....))))).)))))..))))))..)).)))))))))))))))))).))).. ( -33.40)
>DroEre_CAF1 21611 110 - 1
--------CACACACACUUGCGCACCGCGUAAAGCGAAUUUCUCUUGGUUGAAAGGGAUUU-UUUGCAAGUCGAAAUAUCCUCGUUUCAGUUGCCCCAAAAGGUGUGGUGAAUAAGUCA
--------.......(((((..((((((((((.(((((..((((((......))))))...-))))).....(((((......)))))..)))).((....)).))))))..))))).. ( -29.80)
>DroYak_CAF1 21577 119 - 1
UGUUUUUUCACACACAUUUGCGCACUGAAUAAAGAAAAUUUCUCUUGGUUGAAAGGGAUUUUUUUGCUAUUCGAAAUAUCCUCGUUUCAGUUGCCACAAAUGGUGUGGUGAGAAAGUCA
.(((((((((((((((((((.((((((((((..(((((..((((((......))))))..)))))..)))))(((((......))))))).)))..))))).)))).))))))))).). ( -35.90)
>consensus
CGCUCUUUUACACACACUUGCACACUGAAUAGAGCAAAUUUCUCUUGGUUGAAAGGGAUUU_UUUGCUGGUCGAAAUAUCCUCGUUUCAGUUAACAGAAGAGGUGUGGUGAAAAAGUCA
.....((((((.(((((((.............((((((..((((((......))))))....))))))....(((((......)))))............)))))))))))))...... (-23.40 = -24.08 +   0.68)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:52 2006