Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,575,922 – 5,576,042 |
Length | 120 |
Max. P | 0.999710 |
Location | 5,575,922 – 5,576,042 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.75 |
Mean single sequence MFE | -31.50 |
Consensus MFE | -30.54 |
Energy contribution | -30.74 |
Covariance contribution | 0.20 |
Combinations/Pair | 1.00 |
Mean z-score | -2.18 |
Structure conservation index | 0.97 |
SVM decision value | 3.93 |
SVM RNA-class probability | 0.999710 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5575922 120 + 22407834 UGCACCCGGAAAAACUAACUCUCGAGGGCCUCAUCAAAGCCAAGCGCUCUCGGGGAUUACGCCUUUGGUUUGAAAACUUACCACAGACAAGAGGCAUAAAGCACAUUAUCCAGACACCAA .......(((.....(((..(((((((((((...........)).)))))))))..))).((((((.(((((...........))))).)))))).............)))......... ( -31.90) >DroSec_CAF1 19955 114 + 1 ------CGGAAAAACUAACUCUCGAGGGCCUCAUCAAAGCCAAGCGCUCUCGGGGAUUACGCCUUUGGUUUGAAAACUUACCACAGACAAGAGGCAUAAAGCACAUUAUCCAGACACCAA ------.(((.....(((..(((((((((((...........)).)))))))))..))).((((((.(((((...........))))).)))))).............)))......... ( -31.90) >DroSim_CAF1 21617 120 + 1 UGCACCCGGAAAAACUAACUCUCGAGGGCCUCAUCAAAGCCAAGCGCUCUCGGGGAUUACGCCUUUGGUUUGAAAACUUACCACAGACAAGAGGCAUAAAGCACAUUAUCCAGACACCAA .......(((.....(((..(((((((((((...........)).)))))))))..))).((((((.(((((...........))))).)))))).............)))......... ( -31.90) >DroEre_CAF1 19858 120 + 1 UAUAGCCAGAAGAACUAACUCUCGAGGGCCUCAUCAAAGCCAAGCGCUCUCGGGGAUUACGCCUUUGGUUUGAAAACUUACCACAGACAAGAGGCAUAAAGCACAUUAUCCAGACACCCA ....((.........(((..(((((((((((...........)).)))))))))..))).((((((.(((((...........))))).)))))).....)).................. ( -29.90) >DroYak_CAF1 19748 120 + 1 UAUACCCGGAAAAACUAACUCUCGAGGGCCUCAUCAAAGCCAAGCGCUCUCGGGGAUUACGCCUUUGGUUUGAAAACUUACCACAGACAAGAGGCAUAAAGCACAUUAUCCAGAGACCAA .......(((.....(((..(((((((((((...........)).)))))))))..))).((((((.(((((...........))))).)))))).............)))......... ( -31.90) >consensus UACACCCGGAAAAACUAACUCUCGAGGGCCUCAUCAAAGCCAAGCGCUCUCGGGGAUUACGCCUUUGGUUUGAAAACUUACCACAGACAAGAGGCAUAAAGCACAUUAUCCAGACACCAA .......(((.....(((..(((((((((((...........)).)))))))))..))).((((((.(((((...........))))).)))))).............)))......... (-30.54 = -30.74 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:43 2006