Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,573,070 – 5,573,180 |
Length | 110 |
Max. P | 0.935328 |
Location | 5,573,070 – 5,573,180 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 91.88 |
Mean single sequence MFE | -36.67 |
Consensus MFE | -30.53 |
Energy contribution | -33.84 |
Covariance contribution | 3.31 |
Combinations/Pair | 1.03 |
Mean z-score | -1.56 |
Structure conservation index | 0.83 |
SVM decision value | 0.21 |
SVM RNA-class probability | 0.634255 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5573070 110 + 22407834 GGUGAUGAUGGUGUAUGCCGAUAACGUGAGUCCUGGCACUCUCCGCCAGCCAGACCCACUAAUUUUUUACGGCUCUGGCUGGUAGCUCCUUUGCUGAUGCCCCCCCCCCC (((......((.(..(((((...((....))..)))))..).))((((((((((.((.............)).))))))))))(((......)))...)))......... ( -37.92) >DroSec_CAF1 17087 104 + 1 GGUGAUGAUGGUGUAUGCCGAUAACGUGAGUCCUGGCACUCUCCACCAGCCAGACCCACUAAUUUUUUACGGCUCUGGCUGGGAGCUCCUUUGCUGAUGGUCUC------ ...(((.((((.(..(((((...((....))..)))))..).)).(((((((((.((.............)).))))))))).(((......))).)).)))..------ ( -37.02) >DroEre_CAF1 17114 102 + 1 GGUGAUGAUGGUGUAUGCCGAUAACGUGAGUCCUGGCACUCUCCACCAGCCAGACCCACUAAUUUUUUACGGCUCUGGCUGGGAGCUCUUUGGCUGAUGGCC-------- (((.((..(((.(..(((((...((....))..)))))..).)))(((((((((.((.............)).))))))))).((((....)))).)).)))-------- ( -38.42) >DroYak_CAF1 16945 102 + 1 GGUGAUGAUGGUGUAUGCCGAUAACGUGAGUCCUGGCACUCUCCUCCAGCCAGACCCACUAAUUUUUUACGGCUCUGGCUGUGAGCUCUUUGGCUGAUGGCC-------- (((.((((.((.(..(((((...((....))..)))))..).))))((((((((.((.............)).))))))))..((((....)))).)).)))-------- ( -33.32) >consensus GGUGAUGAUGGUGUAUGCCGAUAACGUGAGUCCUGGCACUCUCCACCAGCCAGACCCACUAAUUUUUUACGGCUCUGGCUGGGAGCUCCUUGGCUGAUGGCC________ (((.((...((.(..(((((...((....))..)))))..).)).(((((((((.((.............)).))))))))).(((......))).)).)))........ (-30.53 = -33.84 + 3.31)
Location | 5,573,070 – 5,573,180 |
---|---|
Length | 110 |
Sequences | 4 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 91.88 |
Mean single sequence MFE | -36.67 |
Consensus MFE | -33.10 |
Energy contribution | -33.35 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.00 |
Mean z-score | -1.94 |
Structure conservation index | 0.90 |
SVM decision value | 1.24 |
SVM RNA-class probability | 0.935328 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5573070 110 - 22407834 GGGGGGGGGGGCAUCAGCAAAGGAGCUACCAGCCAGAGCCGUAAAAAAUUAGUGGGUCUGGCUGGCGGAGAGUGCCAGGACUCACGUUAUCGGCAUACACCAUCAUCACC (((..(..((((....)).......(..(((((((((.((((((....))).))).)))))))))..).(.(((((..(((....)))...))))).).))..)..).)) ( -37.40) >DroSec_CAF1 17087 104 - 1 ------GAGACCAUCAGCAAAGGAGCUCCCAGCCAGAGCCGUAAAAAAUUAGUGGGUCUGGCUGGUGGAGAGUGCCAGGACUCACGUUAUCGGCAUACACCAUCAUCACC ------(((.((.........))..)))(((((((((.((((((....))).))).)))))))))(((.(.(((((..(((....)))...))))).).)))........ ( -35.80) >DroEre_CAF1 17114 102 - 1 --------GGCCAUCAGCCAAAGAGCUCCCAGCCAGAGCCGUAAAAAAUUAGUGGGUCUGGCUGGUGGAGAGUGCCAGGACUCACGUUAUCGGCAUACACCAUCAUCACC --------(((.....)))...((....(((((((((.((((((....))).))).)))))))))(((.(.(((((..(((....)))...))))).).)))))...... ( -37.80) >DroYak_CAF1 16945 102 - 1 --------GGCCAUCAGCCAAAGAGCUCACAGCCAGAGCCGUAAAAAAUUAGUGGGUCUGGCUGGAGGAGAGUGCCAGGACUCACGUUAUCGGCAUACACCAUCAUCACC --------(((.....)))...((.(((.((((((((.((((((....))).))).)))))))))))..(.(((((..(((....)))...))))).)....))...... ( -35.70) >consensus ________GGCCAUCAGCAAAAGAGCUCCCAGCCAGAGCCGUAAAAAAUUAGUGGGUCUGGCUGGUGGAGAGUGCCAGGACUCACGUUAUCGGCAUACACCAUCAUCACC ...............(((......))).(((((((((.((((((....))).))).))))))))).((.(.(((((..(((....)))...))))).).))......... (-33.10 = -33.35 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:27 2006