Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,569,360 – 5,569,471 |
Length | 111 |
Max. P | 0.983575 |
Location | 5,569,360 – 5,569,471 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 95.09 |
Mean single sequence MFE | -25.94 |
Consensus MFE | -25.12 |
Energy contribution | -25.62 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -2.16 |
Structure conservation index | 0.97 |
SVM decision value | 1.68 |
SVM RNA-class probability | 0.971883 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5569360 111 + 22407834 ---------CAGGCCGACUGGCACUCACACUUGGCUCUUGCAAAAACGUGUCUAUUACAAUUCAAUUUGACAAUAGGUGCACACAAAAGCCAACCCAAGCCGCAAGCCAACCAUCCAGCC ---------..(((.(..(((.........((((((..(((......(..((((((.(((......)))..))))))..)........((........)).))))))))))))..).))) ( -23.90) >DroSec_CAF1 14046 111 + 1 ---------CAGGCCGACUGGCACUCACACUUGGCUUUUGCAAAAACGUGUCUAUUACAAUUCAAUUUGACAAUAGGUGCACACAAAAGCCAACCCAAGCCGCAAGCCAACCAUCCAGCC ---------..(((....((((........((((((((((.......(..((((((.(((......)))..))))))..)...)))))))))).....))))...)))............ ( -26.52) >DroSim_CAF1 15596 120 + 1 CUCUGGUCGCAGGCCGACUGGCACUCACACUUGGCUUUUGCAAAAACGUGUCUAUUACAAUUCAAUUUGACAAUAGGUGCACACAAAAGCCAACCCAAGCCGCAAGCCAACCAUCCAGCC ..((((..(..(((....((((........((((((((((.......(..((((((.(((......)))..))))))..)...)))))))))).....))))...)))...)..)))).. ( -30.32) >DroYak_CAF1 14322 111 + 1 ---------CAGGCCGACUGGCACUCACACUUGGCUCUUGCAAAAACGUGUCUAUUACAAUUCAAUUUGACAAUAGGUGCACACAAAAGCCAACCCAAGCCGCAAGCCAACCAUCCAACC ---------..(((....((((........((((((.(((.......(..((((((.(((......)))..))))))..)...))).)))))).....))))...)))............ ( -23.02) >consensus _________CAGGCCGACUGGCACUCACACUUGGCUCUUGCAAAAACGUGUCUAUUACAAUUCAAUUUGACAAUAGGUGCACACAAAAGCCAACCCAAGCCGCAAGCCAACCAUCCAGCC ...........(((....((((........((((((((((.......(..((((((.(((......)))..))))))..)...)))))))))).....))))...)))............ (-25.12 = -25.62 + 0.50)
Location | 5,569,360 – 5,569,471 |
---|---|
Length | 111 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 95.09 |
Mean single sequence MFE | -39.75 |
Consensus MFE | -39.61 |
Energy contribution | -39.17 |
Covariance contribution | -0.44 |
Combinations/Pair | 1.05 |
Mean z-score | -2.23 |
Structure conservation index | 1.00 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983575 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5569360 111 - 22407834 GGCUGGAUGGUUGGCUUGCGGCUUGGGUUGGCUUUUGUGUGCACCUAUUGUCAAAUUGAAUUGUAAUAGACACGUUUUUGCAAGAGCCAAGUGUGAGUGCCAGUCGGCCUG--------- (((((..((((..(((..((.(((((.((.((...(((((....((((((.(((......)))))))))))))).....))..)).)))))))..)))))))..)))))..--------- ( -40.00) >DroSec_CAF1 14046 111 - 1 GGCUGGAUGGUUGGCUUGCGGCUUGGGUUGGCUUUUGUGUGCACCUAUUGUCAAAUUGAAUUGUAAUAGACACGUUUUUGCAAAAGCCAAGUGUGAGUGCCAGUCGGCCUG--------- (((((..((((..(((..((.(((((.((.((...(((((....((((((.(((......)))))))))))))).....))..)).)))))))..)))))))..)))))..--------- ( -39.60) >DroSim_CAF1 15596 120 - 1 GGCUGGAUGGUUGGCUUGCGGCUUGGGUUGGCUUUUGUGUGCACCUAUUGUCAAAUUGAAUUGUAAUAGACACGUUUUUGCAAAAGCCAAGUGUGAGUGCCAGUCGGCCUGCGACCAGAG ..((((..((((((((.(((.((((.(((((((((((((((...((((((.(((......))))))))).)))......))))))))))).).))))))).)))))))).....)))).. ( -41.90) >DroYak_CAF1 14322 111 - 1 GGUUGGAUGGUUGGCUUGCGGCUUGGGUUGGCUUUUGUGUGCACCUAUUGUCAAAUUGAAUUGUAAUAGACACGUUUUUGCAAGAGCCAAGUGUGAGUGCCAGUCGGCCUG--------- (((((..((((..(((..((.(((((.((.((...(((((....((((((.(((......)))))))))))))).....))..)).)))))))..)))))))..)))))..--------- ( -37.50) >consensus GGCUGGAUGGUUGGCUUGCGGCUUGGGUUGGCUUUUGUGUGCACCUAUUGUCAAAUUGAAUUGUAAUAGACACGUUUUUGCAAAAGCCAAGUGUGAGUGCCAGUCGGCCUG_________ (((((..((((..(((..((.(((((.((.((...(((((....((((((.(((......)))))))))))))).....))..)).)))))))..)))))))..)))))........... (-39.61 = -39.17 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:18 2006