Locus 206

Sequence ID 2L_DroMel_CAF1
Location 608,118 – 608,237
Length 119
Max. P 0.883283
window309

overview

Window 9

Location 608,118 – 608,237
Length 119
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 97.98
Mean single sequence MFE -39.16
Consensus MFE -34.92
Energy contribution -35.36
Covariance contribution 0.44
Combinations/Pair 1.02
Mean z-score -1.62
Structure conservation index 0.89
SVM decision value 0.93
SVM RNA-class probability 0.883283
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 608118 119 + 22407834
UCUAUUCUCAAUUCUCAGUUUUUCCUCCGGUGGGGGAACAACUGGCAGCGGUUGUUUGCCUUUUGCCUAGAUUCCGCGCCGGCGAAUCCGCGAUGAGAAAAUGCGUCAUAAAUGCGUAA
....((((((....((((((.(((((((...))))))).))))))..((((..(((((((...(((.........)))..)))))))))))..)))))).((((((.....)))))).. ( -41.30)
>DroSec_CAF1 39542 119 + 1
UCUAUUCUCAAUUCUCCGAUUUUCCUCCGGAGGGGGAACAACUGGCAGCGGUUGUUUGCCUUUUGCCUAGAUUCCGCGCCGGCGAAUCCGCGAUGAGAAAAUGCGUCAUAAAUGCGUAA
....((((((...(((((.........)))))((.(((((((((....))))))))).))..((((...(((((.((....))))))).)))))))))).((((((.....)))))).. ( -39.80)
>DroSim_CAF1 37938 119 + 1
UCUAUUCUCAAUUCUCCGUUUUUCCUCCGGUGGGGGAACAACUGGCAGCGGUUGUUUGCCUUUUGCCUAGAUUCCGCGCCGGCGAAUCCGCGAUGAGAAAAUGCGUCAUAAAUGCGUAA
....((((((....((((..(((...((((((.((((.(....(((((.(((.....)))..)))))..).)))).)))))).)))..)).)))))))).((((((.....)))))).. ( -38.00)
>DroEre_CAF1 40063 119 + 1
UCUAUUCUCAAUUCUCCGUUUUUCCCCCGGUGGGGCAACAACUGGCAGCGGUUGUUUGCCUUUUGCCUAGAUUCCGCGCCGGCGAAUCCGAGAUGAGAAAAUGCGUCAUAAAUGCGUAA
....((((((..((((............((((((((((((((((....)))))).)))))))..)))..(((((.((....))))))).)))))))))).((((((.....)))))).. ( -38.70)
>DroYak_CAF1 40020 119 + 1
UCUAUUCUCAAUUCUCCGUUUUUCCUCCGGUGGGGGAACAACUGGCAGCGGUUGUUUGCCUUUUGCCUAGAUUCCGCGCCGGCGAAUCCGCGAUGAGAAAAUGCGUCAUAAAUGCGUAA
....((((((....((((..(((...((((((.((((.(....(((((.(((.....)))..)))))..).)))).)))))).)))..)).)))))))).((((((.....)))))).. ( -38.00)
>consensus
UCUAUUCUCAAUUCUCCGUUUUUCCUCCGGUGGGGGAACAACUGGCAGCGGUUGUUUGCCUUUUGCCUAGAUUCCGCGCCGGCGAAUCCGCGAUGAGAAAAUGCGUCAUAAAUGCGUAA
....((((((((((.(((((.(((((((...))))))).))).(((.((((..((((((.....))..)))).))))))))).))))......)))))).((((((.....)))))).. (-34.92 = -35.36 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:19 2006