Locus 2058

Sequence ID 2L_DroMel_CAF1
Location 5,564,445 – 5,564,559
Length 114
Max. P 0.738764
window3310

overview

Window 0

Location 5,564,445 – 5,564,559
Length 114
Sequences 4
Columns 117
Reading direction reverse
Mean pairwise identity 82.26
Mean single sequence MFE -26.90
Consensus MFE -16.13
Energy contribution -16.75
Covariance contribution 0.63
Combinations/Pair 1.12
Mean z-score -2.12
Structure conservation index 0.60
SVM decision value 0.44
SVM RNA-class probability 0.738764
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5564445 114 - 22407834
CAACAAAUCGCUAAACGGAUGUUGGCCCUGUAUACACGGCGAGCAACAACUUCAACAUGGCCAACAAAAGCUCCUUUUUUUACCAGAAAAAAAACAGAAAAUAAUGGGAGGGGG---
...................((((((((((((....)))).(((.......))).....))))))))....(((((((..(((...................)))..))))))).--- ( -21.21)
>DroSec_CAF1 9101 98 - 1
CAGAAAAUCGCUAAACGGAUGUUGCCGCUGUAUACACGGCGAGCAACAACUUCAACAUGGCCAACAAAAGCUCCUUUUUUUACCAAAA---AAA-------------AGGGGGG---
.........((((....((((((((((((((....)))))).))))))...))....)))).........(((((((((((....)))---)))-------------)))))..--- ( -31.10)
>DroSim_CAF1 9055 100 - 1
CAACAAAUCGCUAAACGGAUGUUGCCGCUGUAUACACGGCGAGCAACAACUUCAACAUGGCCAACAAAAGCUCCUUU-UUUACCAAAAAUAAAA-------------GGGGGGG---
.........((((....((((((((((((((....)))))).))))))...))....)))).........(((((((-((((.......)))))-------------)))))).--- ( -30.10)
>DroEre_CAF1 8945 101 - 1
CAGCAAAUCGCUAAACGGAUGUUGGCCCUGUAUACACGGAAAGCAACAACUUCGACAUGGCCAACAAAAGCUCUUUUUUUUAACGCAAAAA----------------AGGGGGGGGG
.(((.....))).......((((((((.(((.....((((..........))))))).))))))))....(((((((((((.....)))))----------------)))))).... ( -25.20)
>consensus
CAACAAAUCGCUAAACGGAUGUUGCCCCUGUAUACACGGCGAGCAACAACUUCAACAUGGCCAACAAAAGCUCCUUUUUUUACCAAAAAAAAAA_____________AGGGGGG___
.........((((....((((((((((((((....)))))).))))))...))....)))).........((((((...............................)))))).... (-16.13 = -16.75 +   0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:13 2006