Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,563,802 – 5,563,979 |
Length | 177 |
Max. P | 0.969812 |
Location | 5,563,802 – 5,563,904 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 102 |
Reading direction | forward |
Mean pairwise identity | 91.77 |
Mean single sequence MFE | -13.67 |
Consensus MFE | -10.88 |
Energy contribution | -11.12 |
Covariance contribution | 0.24 |
Combinations/Pair | 1.07 |
Mean z-score | -1.84 |
Structure conservation index | 0.80 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.876733 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5563802 102 + 22407834 ACAAGAACACAAAUCGCCUUGUAAACAUAUGUAUGCAAAAUGCAUGCUGGUCCAUAAAUACCAAUUAAUAUUUAACCCGCAAUAAAAAAUACACAGACAGUU (((((............))))).......(((((((.....)).(((.(((...((((((........))))))))).))).......)))))......... ( -13.50) >DroSec_CAF1 8466 96 + 1 ACAAGAACACAAAUCGCCUUGUA----UAUGUAUGCAAAAUGCAUGCUGGUCCAUAAAUACCAAUUAAUAUUUAACCCGCAAUAAAAAAUACACAGACAA-- (((((............))))).----..(((((((.....)).(((.(((...((((((........))))))))).))).......))))).......-- ( -13.50) >DroSim_CAF1 8418 96 + 1 ACAAGAACACAAAUCGCCUUGUA----UAUGUAUGCAAAAUGCAUGCUGGUCCAUAAAUACCAAUUAAUAUUUAACCCGCAAUAAAAAAUACACAGACAA-- (((((............))))).----..(((((((.....)).(((.(((...((((((........))))))))).))).......))))).......-- ( -13.50) >DroEre_CAF1 8334 94 + 1 ACAAGAACACAAAUCGCCUUGUA----UAUGUGUGCAAAAUGCAUGCUGGCCCAUAAAUACCAAUUAAUAUUUCAUCCGCAAUAAAAACU--GCAGACAA-- (((((............))))).----..(((.((((.......(((.((.....(((((........)))))...)))))........)--))).))).-- ( -12.46) >DroYak_CAF1 8611 100 + 1 ACAAGAACACAAAUCGCCUUGUAUCAGUAUGUAUGCAAAAUGCAUGCUGGCCCAUAAAUACCAAUUAAUAUUUCAUCCGCAAUAAAAAACACACAGACAA-- (((((............))))).(((((((((((.....)))))))))))..................................................-- ( -15.40) >consensus ACAAGAACACAAAUCGCCUUGUA____UAUGUAUGCAAAAUGCAUGCUGGUCCAUAAAUACCAAUUAAUAUUUAACCCGCAAUAAAAAAUACACAGACAA__ (((((............)))))........((((((.....))))))((((........))))....................................... (-10.88 = -11.12 + 0.24)
Location | 5,563,865 – 5,563,979 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 119 |
Reading direction | forward |
Mean pairwise identity | 89.33 |
Mean single sequence MFE | -22.86 |
Consensus MFE | -16.66 |
Energy contribution | -16.54 |
Covariance contribution | -0.12 |
Combinations/Pair | 1.12 |
Mean z-score | -3.11 |
Structure conservation index | 0.73 |
SVM decision value | 1.65 |
SVM RNA-class probability | 0.969812 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5563865 114 + 22407834 AUUAAUAUUUAACCCGCAAUAAAAAAUACACAGACAGUUUAAAACAGUUUGUGGUUU-UUUUAGAAACGUUUUGCCAAGCUCGAAA-A---AAAGUGAGAAUUGUGGCAUAAAUAACAA .....((((((...((...(((((((..(((((((.((.....)).)))))))..))-)))))....))...(((((..((((...-.---....)))).....))))))))))).... ( -24.00) >DroSec_CAF1 8525 114 + 1 AUUAAUAUUUAACCCGCAAUAAAAAAUACACAGACAA--UAAAACAGUUUGUGGUUUUUUUUAGAAACGUUUUUCCAAGCUCCAAAAA---AAAGUGAGAGUUGUGGCAUAAAUAACAA .....((((((..((((..(((((((..(((((((..--.......)))))))...)))))))..............(((((((....---....)).)))))))))..)))))).... ( -23.10) >DroSim_CAF1 8477 113 + 1 AUUAAUAUUUAACCCGCAAUAAAAAAUACACAGACAA--UAAAACAGUUUGUGGUUUUUUUUAGAAACGUUUUUCCAAGCUCCAAA-A---AAAGUGAGAAUUGUGGCAUAAAUAACAA .....((((((..(((((((.((((((.(((((((..--.......)))))))(((((.....))))))))))).....((((...-.---...).))).)))))))..)))))).... ( -21.90) >DroEre_CAF1 8393 112 + 1 AUUAAUAUUUCAUCCGCAAUAAAAACU--GCAGACAA--UAAAACAGUUUGCGGUUU--UUUAGAAACGUUUUUCCAAACUCAAAA-AAAGAAAGUGAAAAUUGUGGCAUAAAUAACAA .....(((((...((((((((((((((--((((((..--.......)))))))))))--)).......((((....))))......-.............)))))))...))))).... ( -23.10) >DroYak_CAF1 8674 114 + 1 AUUAAUAUUUCAUCCGCAAUAAAAAACACACAGACAA--UAAAACCGUUUGUGGUU---UUUAGAAACGUUUUUACAAACUCAAAAAAAAGAAAGUGAAAAUUGUGGCAUAAAUAACAA .....(((((...(((((((.((((((.(((((((..--.......))))))))))---)))........((((((...((........))...)))))))))))))...))))).... ( -22.20) >consensus AUUAAUAUUUAACCCGCAAUAAAAAAUACACAGACAA__UAAAACAGUUUGUGGUUU_UUUUAGAAACGUUUUUCCAAGCUCAAAA_A___AAAGUGAGAAUUGUGGCAUAAAUAACAA .....((((((..(((((((........(((((((...........)))))))...............((((....))))....................)))))))..)))))).... (-16.66 = -16.54 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:12 2006