Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,560,626 – 5,560,716 |
Length | 90 |
Max. P | 0.872817 |
Location | 5,560,626 – 5,560,716 |
---|---|
Length | 90 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 78.64 |
Mean single sequence MFE | -19.27 |
Consensus MFE | -13.84 |
Energy contribution | -13.48 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.17 |
Mean z-score | -1.62 |
Structure conservation index | 0.72 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.872817 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5560626 90 + 22407834 ---------A--------CACAUCCUUUCGCACAUAGACCUUAUUCGCUUGCAGCACAUCCUAGCAUGGAAACAGCUCCACAAAGCUGGUAUCAAGAUGCAGGAAUU ---------.--------...........(((....((......))...)))......((((.((((.((..(((((......)))))...))...))))))))... ( -18.40) >DroPse_CAF1 7129 107 + 1 CUUUUCCCAAUCAAUACCUAUCCCCUUCCUCCCUUAGACCUCAAUCGCCUGCAGCACAUCUUUGCCUGGAAACAGCUUCAUAAAACGGGUAUCAAAAUGCAGGAAUU ...............................................(((((((((......)))(((....)))......................)))))).... ( -16.30) >DroSec_CAF1 5199 90 + 1 ---------A--------CAUAUCCUUUCCCACAAAGACCUUAUUCGCCUGCAGCACAUCCUAGCAUGGAAGCAGCUCCACAAAGCCGGGAUCAAGAUGCAGGAAUU ---------.--------.............................((((((....((((..((.((((......))))....))..)))).....)))))).... ( -21.70) >DroSim_CAF1 5174 90 + 1 ---------A--------CAUAUCCUUUCCCACAAAGACCUUAUUCGCCUGCAGCACAUCCUAGCAUGGAAGCAGCUCCACAAAGCCGGGAUCAAGAUGCAGGAAUU ---------.--------.............................((((((....((((..((.((((......))))....))..)))).....)))))).... ( -21.70) >DroYak_CAF1 5364 90 + 1 ---------A--------CAUCUCCUUUCCCACAAAGACCUCAUUCGCCUGCAGCACAUCCUAGCAUGGAAACAGCUCCACAAAGCAGGGAUCAAGAUGCAGGAAUU ---------.--------.............................((((((....(((((.((.((((......))))....)).))))).....)))))).... ( -21.20) >DroPer_CAF1 7122 107 + 1 CUUUUCCCAAUCAAUACCUACCCCCUUCCUCCCUUAGACCUCAAUCGCCUGCAGCACAUCUUUGCCUGGAAACAGCUUCAUAAAACGGGUAUCAAAAUGCAGGAAUU ...............................................(((((((((......)))(((....)))......................)))))).... ( -16.30) >consensus _________A________CAUAUCCUUUCCCACAAAGACCUCAUUCGCCUGCAGCACAUCCUAGCAUGGAAACAGCUCCACAAAGCCGGGAUCAAGAUGCAGGAAUU ...............................................((((((..........((.((....)))).((........))........)))))).... (-13.84 = -13.48 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:11 2006