Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,554,570 – 5,554,690 |
Length | 120 |
Max. P | 0.642591 |
Location | 5,554,570 – 5,554,690 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 91.83 |
Mean single sequence MFE | -39.24 |
Consensus MFE | -32.84 |
Energy contribution | -33.00 |
Covariance contribution | 0.16 |
Combinations/Pair | 1.11 |
Mean z-score | -1.35 |
Structure conservation index | 0.84 |
SVM decision value | 0.23 |
SVM RNA-class probability | 0.642591 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5554570 120 + 22407834 GACUCGGAUAACUACAAGGUUAUUCCGGAUGCCGUCAAGGGUUUGUGCUUCGCGCACAAGGGCGAUGGUUCGAUGCUCAGCAUAGAGAAGUAUAUAACCGAAGAGCAUCCGUUGUGCAAA .....((((((((....))))))))((((((((.((...((((((((((((.(((......))).....((.((((...)))).)))))))))).)))))).).)))))))......... ( -37.50) >DroSec_CAF1 6707 120 + 1 GACUCGGAUAACUACAAGGUUAUUCCGGAUGCCGUCAAGGGUUUGUGCUUCGCGCACAAGGGCGAUGGUUCGAUGCUCAGCAUAGAGAAGUAUAUAACCGAAGAGCAUCCGUUGUGCAAA .....((((((((....))))))))((((((((.((...((((((((((((.(((......))).....((.((((...)))).)))))))))).)))))).).)))))))......... ( -37.50) >DroSim_CAF1 6827 120 + 1 GACUCGGAUAACUACAAGGUUAUUCCGGAUGCCGUCAAGGGGUUGUGCUUCGCGCACAAGGGCGAUGGUUCCAUGAUUAGCAUAGAGAAGUAUAUUACCGAAGAGCAUCCGUUGUGCAAA .....((((((((....))))))))((((((((.....((...((((((((.(((......)))(((....)))............))))))))...))...).)))))))......... ( -35.60) >DroEre_CAF1 6893 120 + 1 GACUCGGACAACUACAAGGUUGUGCCCGAUGCCCUCAAGGGCUUGUGCUUCUCGCACAAGGGCGAUGGCUCCAUGCUCAGCAUAGAGAAGUACAUAACCGAGGAGCAUCCGCUGUGCAAG ..(((((((((((....))))))((((...((((....))))((((((.....)))))))))).((..(((.((((...)))).)))..))......)))))..((((.....))))... ( -46.60) >DroYak_CAF1 7006 120 + 1 GACUCGGACAACUACAAGGUCAUACCGGAUGCCGUCAAGGGUUUGUGCUUCUCGCACAAGGGCGAUGGCUCGAUGCUCUGCAUAGAGAAAUACAUUACCGAGGAGCAUCCGCUGUGCAAA ((((..(.......)..))))(((.((((((((.((.....(((((((.....)))))))((..(((.(((.((((...)))).))).....)))..)))).).))))))).)))..... ( -39.00) >consensus GACUCGGAUAACUACAAGGUUAUUCCGGAUGCCGUCAAGGGUUUGUGCUUCGCGCACAAGGGCGAUGGUUCGAUGCUCAGCAUAGAGAAGUAUAUAACCGAAGAGCAUCCGUUGUGCAAA .....(.(((((.....((.....))(((((((.((.....(((((((.....)))))))((..(((.(((.((((...)))).))).....)))..)))).).))))))))))).)... (-32.84 = -33.00 + 0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:10 2006