Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,553,383 – 5,553,503 |
Length | 120 |
Max. P | 0.683465 |
Location | 5,553,383 – 5,553,503 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 90.92 |
Mean single sequence MFE | -45.16 |
Consensus MFE | -41.60 |
Energy contribution | -41.44 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.15 |
Mean z-score | -1.18 |
Structure conservation index | 0.92 |
SVM decision value | 0.13 |
SVM RNA-class probability | 0.597662 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5553383 120 + 22407834 ACCGAUAGUAUCUUGUUCAAGUUGAGCAGCUCGCGGGCCUUGAACUCCAGAAGAACUGGGUCCCUGUUCGUCGGCGACAGGAGGUCGCUGAACAGGCCCACGUGUGCCAGCUUCGGCCUA .((((.(((....(((((.....)))))((.((.((((((.(((((((((.....))))).....)))).((((((((.....))))))))..)))))).)).))....))))))).... ( -47.50) >DroSec_CAF1 5547 120 + 1 ACCGAGAGUAUCUUGUUCAAAUUGAGCAGCUCGCGGGCCUUGAACUCCAGAAGCACUGGGUCCCUGUUCGUCGGCGGCAGGAGGUCGCUGAAGAGGCCCACGUGUGCCAGCUUCGGCCUA .((((.(((....(((((.....)))))((.((.((((((((((((((((.....))))).....)))).((((((((.....)))))))).))))))).)).))....))))))).... ( -48.80) >DroSim_CAF1 5663 120 + 1 ACCGAGAGUAUCUUGUUCAAGUUAAGCAGCUCGCGGGCCUUGAACUCCAGAAGCACUGGGUCCCUGUUCGUCGGCGCCAGGAGGUCGCUGAAGAGGCCCACGUGUGCCAGCUUUGGCCUA ((((.((((..((((.......))))..))))..((((((((((((((((.....))))).....)))).((((((((....)).)))))).))))))).)).))(((......)))... ( -43.60) >DroEre_CAF1 5737 120 + 1 ACCGAUAGAAUCUUGUUCAAGUUGAGCAGCUCGCGGGCCUUGAACUCCAGAAGCACUGGAUCGCAGUUCGUCGGCGACAUGAGAUCGCUGAACAGGCCCACGUGUGCCAUCUUCGGCCUA .((((.(((....(((((.....)))))((.((.((((((.(((((((((.....))))).....)))).((((((((....).)))))))..)))))).)).))....))))))).... ( -44.70) >DroYak_CAF1 5876 120 + 1 ACCGAAAGAAUCUUGUUCAAGUUGAGCAGCUCGCGGGCCUUGAACUCCAGAAGCACUGGGUCCGUGUUCGUCGGGGGCAACAAAUCGCUGAACAGGCCCACAUGCGCCAUUUUUGGUCUA ((((((((.....(((((.....)))))((..(.(((((..(.((.((((.....)))))).).((((((.(((.(....)...))).))))))))))).)..))....))))))))... ( -41.20) >consensus ACCGAGAGUAUCUUGUUCAAGUUGAGCAGCUCGCGGGCCUUGAACUCCAGAAGCACUGGGUCCCUGUUCGUCGGCGACAGGAGGUCGCUGAACAGGCCCACGUGUGCCAGCUUCGGCCUA .((((.(((....(((((.....)))))((.((.((((((.(((((((((.....))))).....)))).((((((((.....))))))))..)))))).)).))....))))))).... (-41.60 = -41.44 + -0.16)
Location | 5,553,383 – 5,553,503 |
---|---|
Length | 120 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.92 |
Mean single sequence MFE | -44.64 |
Consensus MFE | -37.00 |
Energy contribution | -37.00 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.14 |
Mean z-score | -1.42 |
Structure conservation index | 0.83 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.683465 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5553383 120 - 22407834 UAGGCCGAAGCUGGCACACGUGGGCCUGUUCAGCGACCUCCUGUCGCCGACGAACAGGGACCCAGUUCUUCUGGAGUUCAAGGCCCGCGAGCUGCUCAACUUGAACAAGAUACUAUCGGU ...((((((((.(((...(((((((((((((.(((((.....)))))....))))..((((((((.....)))).)))).))))))))).))))))...(((....)))......))))) ( -49.20) >DroSec_CAF1 5547 120 - 1 UAGGCCGAAGCUGGCACACGUGGGCCUCUUCAGCGACCUCCUGCCGCCGACGAACAGGGACCCAGUGCUUCUGGAGUUCAAGGCCCGCGAGCUGCUCAAUUUGAACAAGAUACUCUCGGU ...((((((((.(((...((((((((((.((.(((.........))).)).))....((((((((.....)))).))))..)))))))).))))))..((((.....))))....))))) ( -42.00) >DroSim_CAF1 5663 120 - 1 UAGGCCAAAGCUGGCACACGUGGGCCUCUUCAGCGACCUCCUGGCGCCGACGAACAGGGACCCAGUGCUUCUGGAGUUCAAGGCCCGCGAGCUGCUUAACUUGAACAAGAUACUCUCGGU ...(((.((((.(((...((((((((((.((.(((.((....))))).)).))....((((((((.....)))).))))..)))))))).)))))))..(((....)))........))) ( -45.40) >DroEre_CAF1 5737 120 - 1 UAGGCCGAAGAUGGCACACGUGGGCCUGUUCAGCGAUCUCAUGUCGCCGACGAACUGCGAUCCAGUGCUUCUGGAGUUCAAGGCCCGCGAGCUGCUCAACUUGAACAAGAUUCUAUCGGU ...((((((((((((((.(((((((((..((.(((((.....))))).)).((((.....(((((.....))))))))).))))))))).).))).)).(((....)))..))).))))) ( -46.30) >DroYak_CAF1 5876 120 - 1 UAGACCAAAAAUGGCGCAUGUGGGCCUGUUCAGCGAUUUGUUGCCCCCGACGAACACGGACCCAGUGCUUCUGGAGUUCAAGGCCCGCGAGCUGCUCAACUUGAACAAGAUUCUUUCGGU ...(((.....((((((.(((((((((.....(.(.(((((((....)))))))).)((((((((.....)))).)))).))))))))).)).)).)).(((....)))........))) ( -40.30) >consensus UAGGCCGAAGCUGGCACACGUGGGCCUGUUCAGCGACCUCCUGCCGCCGACGAACAGGGACCCAGUGCUUCUGGAGUUCAAGGCCCGCGAGCUGCUCAACUUGAACAAGAUACUAUCGGU ...(((((....(((((.(((((((((..((.(((.........))).)).......((((((((.....)))).)))).))))))))).).))))...(((....)))......))))) (-37.00 = -37.00 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:06 2006