Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,548,482 – 5,548,602 |
Length | 120 |
Max. P | 0.500000 |
Location | 5,548,482 – 5,548,602 |
---|---|
Length | 120 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 82.72 |
Mean single sequence MFE | -47.58 |
Consensus MFE | -28.31 |
Energy contribution | -27.46 |
Covariance contribution | -0.86 |
Combinations/Pair | 1.44 |
Mean z-score | -2.06 |
Structure conservation index | 0.60 |
SVM decision value | -0.07 |
SVM RNA-class probability | 0.500000 |
Prediction | OTHER |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5548482 120 + 22407834 UGCCCAAACAGGCUUUAACCGUGGGCGUUGGCACUGUGAUGGACUCCAAGGAGGUGAUGAUCCUCAUCACCGGAGCUCACAAGGCAUUUGCCCUGUACAAGGCCAUCGAGGAGGGUGUGA .((((.....((((((...((.(((((...((..(((((..(.((((.....(((((((.....)))))))))))))))))..))...)))))))...)))))).((...)))))).... ( -44.90) >DroVir_CAF1 662 120 + 1 UGCCCAAACAGGCGCUCACUGUGGGCGUCGGCACCGUCAUGGAUUCAAAUGAGGUCAUGAUCCUGAUUACCGGCGCCCACAAGGCCUUCGCUCUCUAUAAGGCCAUCGAGGAGGGCGUCA ..........(((((((..((((((((((((((..((((((..(((....)))..))))))..))....)))))))))))).((((((..........))))))........))))))). ( -54.30) >DroGri_CAF1 673 120 + 1 UGCCCAAGCAGGCGCUCACUGUGGGCGUGGGUACCGUUAUGGACUCGCAUGAGGUGAUGAUCUUGAUUACGGGCGCCCACAAGUCCUUCGCCUUGUACAAGGCCAUUGAGGAGGGCGUCA (((....)))(((((((..(((((((((((((.((.....)))))))).....(((((.......)))))....)))))))..(((((.(((((....)))))....)))))))))))). ( -50.10) >DroWil_CAF1 610 120 + 1 UUCCUAAACAGGCUUUAACUGUGGGUGUGGGUACUGUGAUGGAUUCAAAGGAGGUUAUGAUACUCAUAACGGGCGGUCACAAGGCCUUCGCCUUGUACAAAGCGAUCGAAGAAGGUGUUA ......(((..(((((.((...(((((.((((..((((((.(.(((....)))((((((.....))))))...).))))))..)))).))))).))..))))).(((......)))))). ( -34.10) >DroMoj_CAF1 682 120 + 1 UGCCCAAGCAGGCGUUGACUGUGGGCGUGGGCACGGUCAUGGACUCGAAAGAGGUGAUGAUCCUGAUAACGGGCGCCCACAAAGCAUUCGCCUUGUACAAGGCCAUCGAGGAGGGCGUCA .((((..(((((((.((..(((((((((......((((((.(.(((....))).).))))))(((....))))))))))))...))..)))).)))......((.....)).)))).... ( -51.10) >DroAna_CAF1 657 120 + 1 UGCCCAAGCAGGCGCUGACUGUGGGCGUGGGCACUGUGAUGGACUCCAAGGAAGUAAUGAUCCUAAUCACCGGUGCCCACAAGGCCUUCGCCCUCUACAAGGCCAUCGAGGAGGGGGUGA .((((..((((.......))))))))((((((((((((((((...)).((((........)))).)))).)))))))))).......(((((((((....(.....)....))))))))) ( -51.00) >consensus UGCCCAAACAGGCGCUAACUGUGGGCGUGGGCACUGUGAUGGACUCAAAGGAGGUGAUGAUCCUGAUAACCGGCGCCCACAAGGCCUUCGCCCUGUACAAGGCCAUCGAGGAGGGCGUCA .((((..((((.......))))))))((((((.((((((.((((((....))).......)))))))....)).))))))........((((((.................))))))... (-28.31 = -27.46 + -0.86)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:04 2006