Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,547,960 – 5,548,059 |
Length | 99 |
Max. P | 0.603262 |
Location | 5,547,960 – 5,548,059 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 110 |
Reading direction | forward |
Mean pairwise identity | 78.10 |
Mean single sequence MFE | -27.90 |
Consensus MFE | -22.89 |
Energy contribution | -22.37 |
Covariance contribution | -0.52 |
Combinations/Pair | 1.33 |
Mean z-score | -0.90 |
Structure conservation index | 0.82 |
SVM decision value | 0.14 |
SVM RNA-class probability | 0.603262 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5547960 99 + 22407834 A---CU--------AUUCUUUAGAUACUUCGUUUUGGGCCUGCCCACGGGAUCUACGCCAUUGGGAAUGUACAAAGAACUGAUCGAGUUUCAUAAGCAGGGCAAGGUAUC .---..--------........(((((((.((((((.((...((((..((.......))..))))...)).....(((((.....)))))......)))))).))))))) ( -21.30) >DroGri_CAF1 144 109 + 1 U-UUCUCAAUAUAUAUUUGCCAGAUAUUUUGUACUGGGUCUGCCCACGGGUAGCACACCAUUGGGUAUGUACAAGGAGCUGAUUGAGUUUCACAAGCAGGGCAAGGUCUC .-.............((((((.......((((((...(((((((....))))).))(((....)))..))))))((((((.....))))))........))))))..... ( -29.30) >DroEre_CAF1 143 99 + 1 A---CU--------GUUUUUCAGAUACUUUGUUUUGGGGCUGCCCACGGGAUCCACUCCAUUGGGGAUGUACAAAGAACUGAUCGAGUUCUACAAGCAGGGCAAGGUAUC .---..--------........(((((((((((((((..((.((((..(((.....)))..)))).).)..)..((((((.....)))))).....)))))))))))))) ( -31.60) >DroWil_CAF1 157 97 + 1 A---CU--------AU--UUCAGAUACUUUGUAUUGGGUUUACCCACAGGCUCCACGCCAUUGGGAAUGUAUCGAGAGUUAAUUGAAUUCUAUAAGCAGGGCAAGGUAUC .---..--------..--....((((((((((.....(((((((((..(((.....)))..)))).........((((((.....)))))).)))))...)))))))))) ( -28.10) >DroYak_CAF1 162 99 + 1 A---CU--------AUUUUUCAGAUACUUUGUUUUGGGCCUGCCCACGGGUUCCACUCCAUUGGGGAUGUACAAGGAGCUGAUCGAGUUUCACAAGCAGGGCAAGGUAUC .---..--------........((((((((((((((.((.(.((((..((.......))..)))).).))....((((((.....)))))).....)))))))))))))) ( -29.90) >DroAna_CAF1 147 102 + 1 ACAUGU--------AUAUUUCAGAUACUUCGUGCUGGGGCUGCCAACAGGAUCCACACCACUGGGUAUGUACAGGGAGCUCAUUGAGUUUUACAAACAGGGAAAGGUGUC ......--------........(((((((..(.((((((((.((.(((..(((((......))))).)))...)).))))).(((.......))).))).)..))))))) ( -27.20) >consensus A___CU________AUUUUUCAGAUACUUUGUUUUGGGCCUGCCCACGGGAUCCACACCAUUGGGAAUGUACAAAGAGCUGAUCGAGUUUCACAAGCAGGGCAAGGUAUC ......................(((((((((..(((......((((..((.......))..)))).........((((((.....)))))).....)))..))))))))) (-22.89 = -22.37 + -0.52)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:03 2006