Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,546,462 – 5,546,555 |
Length | 93 |
Max. P | 0.894720 |
Location | 5,546,462 – 5,546,555 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 85.40 |
Mean single sequence MFE | -24.10 |
Consensus MFE | -23.07 |
Energy contribution | -23.23 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.57 |
Structure conservation index | 0.96 |
SVM decision value | 0.98 |
SVM RNA-class probability | 0.894720 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5546462 93 + 22407834 CGCAUUUUUUAUGGGUGGGCGUGGUCGCGUUUUACGCCGGCCAAACAAAUGCAACGCCCACACAGACUAUUAUACAAAAACUGAUGAAUACA------A ...........((.(((((((((((((((.....)).)))))...(....)..)))))))).))............................------. ( -23.90) >DroSec_CAF1 8931 93 + 1 CGCAUUUUUUAUGGGUGGGCGUGGUCGCGUUUUACGCCGGCCAAACAAAUGCAACGCCCACACAGACUAUUAUACAAAAACUGAUGAAUACA------A ...........((.(((((((((((((((.....)).)))))...(....)..)))))))).))............................------. ( -23.90) >DroSim_CAF1 11720 93 + 1 CGCAUUUUUUAUGGGUGGGCGUGGUCGCGUUUUACGCCGGCCAAACAAAUGCAACGCCCACACAGACUAUUAUACAAAAACUGAUGAAUACA------A ...........((.(((((((((((((((.....)).)))))...(....)..)))))))).))............................------. ( -23.90) >DroEre_CAF1 9249 93 + 1 CGCAUUUUUUAUGGGUGGGCGUGGUCGCGUUUUACGACGGCCUAACUAAUUCAACGCCCACACAGACUAUUAUACACAAACUGAUGAAUACA------A ...........((.(((((((((((((((.....)).)))))...........)))))))).))............................------. ( -23.70) >DroYak_CAF1 9421 80 + 1 CGCAUUUUUUAUGGGUGGGCGUGGUCGCGUUUUACGUCGGCCCAACAAAUUCAACGCCCACACAGACUAUUACA-------------AAACA------A ...........((.(((((((((((((((.....)).)))))...........)))))))).))..........-------------.....------. ( -23.70) >DroAna_CAF1 8548 96 + 1 CGCAUUU-UUAUGAGUGGGCGUGGUCGCGUUAUACGCCGGCCAAACAAAUUCUACGCCCAC--AAACUAUUUUACACAAGAUGUUGAGAAGAAGGGAGA (.(.(((-((....(((((((((((((((.....)).)))))...........))))))))--.(((.(((((....))))))))..))))).).)... ( -25.50) >consensus CGCAUUUUUUAUGGGUGGGCGUGGUCGCGUUUUACGCCGGCCAAACAAAUGCAACGCCCACACAGACUAUUAUACAAAAACUGAUGAAUACA______A ...........((.(((((((((((((((.....)).)))))...........)))))))).))................................... (-23.07 = -23.23 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:02 2006