Locus 205

Sequence ID 2L_DroMel_CAF1
Location 607,937 – 608,034
Length 97
Max. P 0.999844
window307 window308

overview

Window 7

Location 607,937 – 608,034
Length 97
Sequences 5
Columns 97
Reading direction forward
Mean pairwise identity 98.76
Mean single sequence MFE -30.12
Consensus MFE -27.36
Energy contribution -27.76
Covariance contribution 0.40
Combinations/Pair 1.00
Mean z-score -1.75
Structure conservation index 0.91
SVM decision value 1.25
SVM RNA-class probability 0.935921
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 607937 97 + 22407834
GCAAUGGGAAUGCGAUGCAAUGCCAGAUCAUUGAUAAUGAUCAGCGGCAUCGACAUCGGCAGCUCCGGCUGAGGAAACACAUCUAGAGUGCAACCUC
.....(((....((((((.(((((.((((((.....))))))...))))).).)))))(((.(((..(.((.(....).)).)..))))))..))). ( -33.20)
>DroSec_CAF1 39369 97 + 1
GCAAUGGGAAUGCAAUGCAAUGCCAGAUCAUUGAUAAUGAUCAGCGGCAUCGACAUCGGCAGCUCCGGCCGAGGAAACACAUCUAGAGUGCAACCUC
((...(((..(((.((((.(((((.((((((.....))))))...))))).).)))..)))..))).)).((((...(((.......)))...)))) ( -27.80)
>DroSim_CAF1 37765 97 + 1
GCAAUGGGAAUGCAAUGCAAUGCCAGAUCAUUGAUAAUGAUCAGCGGCAUCGACAUCGGCAGCUCCGGCCGAGGAAACACAUCUAGAGUGCAACCUC
((...(((..(((.((((.(((((.((((((.....))))))...))))).).)))..)))..))).)).((((...(((.......)))...)))) ( -27.80)
>DroEre_CAF1 39890 97 + 1
GCAAUGGGAAUGCAAUGCAAUGCCAGAUCAUUGAUAAUGAUCAGCGGCAUCGACAUCGGCAGCUCCGGCUGAGGAAACACAUCUAGAGUGCAACCUC
.....((...(((..(((.(((((.((((((.....))))))...)))))((....)))))((((..(.((.(....).)).)..))))))).)).. ( -28.60)
>DroYak_CAF1 39847 97 + 1
GCAAUGGGAAUGCGAUGCAAUGCCAGAUCAUUGAUAAUGAUCAGCGGCAUCGACAUCGGCAGCUCCGGCUGAGGAAACACAUCUAGAGUGCAACCUC
.....(((....((((((.(((((.((((((.....))))))...))))).).)))))(((.(((..(.((.(....).)).)..))))))..))). ( -33.20)
>consensus
GCAAUGGGAAUGCAAUGCAAUGCCAGAUCAUUGAUAAUGAUCAGCGGCAUCGACAUCGGCAGCUCCGGCUGAGGAAACACAUCUAGAGUGCAACCUC
.....((...(((..(((.(((((.((((((.....))))))...)))))((....)))))((((..(.((.(....).)).)..))))))).)).. (-27.36 = -27.76 +   0.40) 

alignment

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secondary structure

Postscript

dotplot

Postscript

Window 8

Location 607,937 – 608,034
Length 97
Sequences 5
Columns 97
Reading direction reverse
Mean pairwise identity 98.76
Mean single sequence MFE -39.64
Consensus MFE -39.88
Energy contribution -39.64
Covariance contribution -0.24
Combinations/Pair 1.03
Mean z-score -4.13
Structure conservation index 1.01
SVM decision value 4.23
SVM RNA-class probability 0.999844
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 607937 97 - 22407834
GAGGUUGCACUCUAGAUGUGUUUCCUCAGCCGGAGCUGCCGAUGUCGAUGCCGCUGAUCAUUAUCAAUGAUCUGGCAUUGCAUCGCAUUCCCAUUGC
((((..((((.......))))..))))....((((.(((.((((.((((((((..((((((.....)))))))))))))))))))))))))...... ( -40.90)
>DroSec_CAF1 39369 97 - 1
GAGGUUGCACUCUAGAUGUGUUUCCUCGGCCGGAGCUGCCGAUGUCGAUGCCGCUGAUCAUUAUCAAUGAUCUGGCAUUGCAUUGCAUUCCCAUUGC
((((..((((.......))))..))))....((((.(((.((((.((((((((..((((((.....)))))))))))))))))))))))))...... ( -38.80)
>DroSim_CAF1 37765 97 - 1
GAGGUUGCACUCUAGAUGUGUUUCCUCGGCCGGAGCUGCCGAUGUCGAUGCCGCUGAUCAUUAUCAAUGAUCUGGCAUUGCAUUGCAUUCCCAUUGC
((((..((((.......))))..))))....((((.(((.((((.((((((((..((((((.....)))))))))))))))))))))))))...... ( -38.80)
>DroEre_CAF1 39890 97 - 1
GAGGUUGCACUCUAGAUGUGUUUCCUCAGCCGGAGCUGCCGAUGUCGAUGCCGCUGAUCAUUAUCAAUGAUCUGGCAUUGCAUUGCAUUCCCAUUGC
((((..((((.......))))..))))....((((.(((.((((.((((((((..((((((.....)))))))))))))))))))))))))...... ( -38.80)
>DroYak_CAF1 39847 97 - 1
GAGGUUGCACUCUAGAUGUGUUUCCUCAGCCGGAGCUGCCGAUGUCGAUGCCGCUGAUCAUUAUCAAUGAUCUGGCAUUGCAUCGCAUUCCCAUUGC
((((..((((.......))))..))))....((((.(((.((((.((((((((..((((((.....)))))))))))))))))))))))))...... ( -40.90)
>consensus
GAGGUUGCACUCUAGAUGUGUUUCCUCAGCCGGAGCUGCCGAUGUCGAUGCCGCUGAUCAUUAUCAAUGAUCUGGCAUUGCAUUGCAUUCCCAUUGC
((((..((((.......))))..))))....((((.(((.((((.((((((((..((((((.....)))))))))))))))))))))))))...... (-39.88 = -39.64 +  -0.24) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:17 2006