Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 607,937 – 608,034 |
Length | 97 |
Max. P | 0.999844 |
Location | 607,937 – 608,034 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 98.76 |
Mean single sequence MFE | -30.12 |
Consensus MFE | -27.36 |
Energy contribution | -27.76 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.75 |
Structure conservation index | 0.91 |
SVM decision value | 1.25 |
SVM RNA-class probability | 0.935921 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 607937 97 + 22407834 GCAAUGGGAAUGCGAUGCAAUGCCAGAUCAUUGAUAAUGAUCAGCGGCAUCGACAUCGGCAGCUCCGGCUGAGGAAACACAUCUAGAGUGCAACCUC .....(((....((((((.(((((.((((((.....))))))...))))).).)))))(((.(((..(.((.(....).)).)..))))))..))). ( -33.20) >DroSec_CAF1 39369 97 + 1 GCAAUGGGAAUGCAAUGCAAUGCCAGAUCAUUGAUAAUGAUCAGCGGCAUCGACAUCGGCAGCUCCGGCCGAGGAAACACAUCUAGAGUGCAACCUC ((...(((..(((.((((.(((((.((((((.....))))))...))))).).)))..)))..))).)).((((...(((.......)))...)))) ( -27.80) >DroSim_CAF1 37765 97 + 1 GCAAUGGGAAUGCAAUGCAAUGCCAGAUCAUUGAUAAUGAUCAGCGGCAUCGACAUCGGCAGCUCCGGCCGAGGAAACACAUCUAGAGUGCAACCUC ((...(((..(((.((((.(((((.((((((.....))))))...))))).).)))..)))..))).)).((((...(((.......)))...)))) ( -27.80) >DroEre_CAF1 39890 97 + 1 GCAAUGGGAAUGCAAUGCAAUGCCAGAUCAUUGAUAAUGAUCAGCGGCAUCGACAUCGGCAGCUCCGGCUGAGGAAACACAUCUAGAGUGCAACCUC .....((...(((..(((.(((((.((((((.....))))))...)))))((....)))))((((..(.((.(....).)).)..))))))).)).. ( -28.60) >DroYak_CAF1 39847 97 + 1 GCAAUGGGAAUGCGAUGCAAUGCCAGAUCAUUGAUAAUGAUCAGCGGCAUCGACAUCGGCAGCUCCGGCUGAGGAAACACAUCUAGAGUGCAACCUC .....(((....((((((.(((((.((((((.....))))))...))))).).)))))(((.(((..(.((.(....).)).)..))))))..))). ( -33.20) >consensus GCAAUGGGAAUGCAAUGCAAUGCCAGAUCAUUGAUAAUGAUCAGCGGCAUCGACAUCGGCAGCUCCGGCUGAGGAAACACAUCUAGAGUGCAACCUC .....((...(((..(((.(((((.((((((.....))))))...)))))((....)))))((((..(.((.(....).)).)..))))))).)).. (-27.36 = -27.76 + 0.40)
Location | 607,937 – 608,034 |
---|---|
Length | 97 |
Sequences | 5 |
Columns | 97 |
Reading direction | reverse |
Mean pairwise identity | 98.76 |
Mean single sequence MFE | -39.64 |
Consensus MFE | -39.88 |
Energy contribution | -39.64 |
Covariance contribution | -0.24 |
Combinations/Pair | 1.03 |
Mean z-score | -4.13 |
Structure conservation index | 1.01 |
SVM decision value | 4.23 |
SVM RNA-class probability | 0.999844 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 607937 97 - 22407834 GAGGUUGCACUCUAGAUGUGUUUCCUCAGCCGGAGCUGCCGAUGUCGAUGCCGCUGAUCAUUAUCAAUGAUCUGGCAUUGCAUCGCAUUCCCAUUGC ((((..((((.......))))..))))....((((.(((.((((.((((((((..((((((.....)))))))))))))))))))))))))...... ( -40.90) >DroSec_CAF1 39369 97 - 1 GAGGUUGCACUCUAGAUGUGUUUCCUCGGCCGGAGCUGCCGAUGUCGAUGCCGCUGAUCAUUAUCAAUGAUCUGGCAUUGCAUUGCAUUCCCAUUGC ((((..((((.......))))..))))....((((.(((.((((.((((((((..((((((.....)))))))))))))))))))))))))...... ( -38.80) >DroSim_CAF1 37765 97 - 1 GAGGUUGCACUCUAGAUGUGUUUCCUCGGCCGGAGCUGCCGAUGUCGAUGCCGCUGAUCAUUAUCAAUGAUCUGGCAUUGCAUUGCAUUCCCAUUGC ((((..((((.......))))..))))....((((.(((.((((.((((((((..((((((.....)))))))))))))))))))))))))...... ( -38.80) >DroEre_CAF1 39890 97 - 1 GAGGUUGCACUCUAGAUGUGUUUCCUCAGCCGGAGCUGCCGAUGUCGAUGCCGCUGAUCAUUAUCAAUGAUCUGGCAUUGCAUUGCAUUCCCAUUGC ((((..((((.......))))..))))....((((.(((.((((.((((((((..((((((.....)))))))))))))))))))))))))...... ( -38.80) >DroYak_CAF1 39847 97 - 1 GAGGUUGCACUCUAGAUGUGUUUCCUCAGCCGGAGCUGCCGAUGUCGAUGCCGCUGAUCAUUAUCAAUGAUCUGGCAUUGCAUCGCAUUCCCAUUGC ((((..((((.......))))..))))....((((.(((.((((.((((((((..((((((.....)))))))))))))))))))))))))...... ( -40.90) >consensus GAGGUUGCACUCUAGAUGUGUUUCCUCAGCCGGAGCUGCCGAUGUCGAUGCCGCUGAUCAUUAUCAAUGAUCUGGCAUUGCAUUGCAUUCCCAUUGC ((((..((((.......))))..))))....((((.(((.((((.((((((((..((((((.....)))))))))))))))))))))))))...... (-39.88 = -39.64 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:17 2006