| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,542,145 – 5,542,241 |
| Length | 96 |
| Max. P | 0.839932 |
| Location | 5,542,145 – 5,542,241 |
|---|---|
| Length | 96 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | reverse |
| Mean pairwise identity | 76.57 |
| Mean single sequence MFE | -19.52 |
| Consensus MFE | -9.24 |
| Energy contribution | -9.72 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.28 |
| Mean z-score | -2.17 |
| Structure conservation index | 0.47 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.839932 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5542145 96 - 22407834 UUAAAAUAGUUAAUUUCACUUUAAAAG-CUGUAUUUUAAAGUGAUAAACGUGCACAAAAGGUGAGUUUGACACUGAAAAUCACACUG-CACUAAAUAA ........(((....(((((((((((.-.....)))))))))))..)))(((((......((((.(((........)))))))..))-)))....... ( -20.60) >DroSec_CAF1 4685 94 - 1 CUUAAACAGUCAAUUUCACUUUAAAAG-CUGUAUUUUAAAGUGA-AAACGUGCACAGAAGGUGAGUUUAGCACGGAAAAUCACAGUG-CACUUAA-AA .............(((((((((((((.-.....)))))))))))-))..((((((.....((((.(((.......))).)))).)))-)))....-.. ( -24.80) >DroSim_CAF1 5568 96 - 1 UUUAAAAAGUGAAAUUCACUUUAAAAG-CUGUAUUUUAAAGUGAUAAACGUGCACAGAAGGUGAGUUUAGCACGUAAAAUCACAGUG-CACUUAAGAA ........((.....(((((((((((.-.....)))))))))))...))((((((.....((((.((((.....)))).)))).)))-)))....... ( -24.80) >DroEre_CAF1 4801 95 - 1 UUC-AAUAGUCAAUUUCACUUUAAAAG-UUGUAUUUUAAAGUGAUAAACGUGCCCAAAAGGUGAGUUCAGUCCGGAAAUUUACACUG-CACUCAAGAA ...-...........(((((((((((.-.....))))))))))).......(((.....)))((((.((((..(........)))))-.))))..... ( -19.40) >DroYak_CAF1 4930 95 - 1 UUU-AAUAGUCAAUUUCACUUUAAAAG-UUGUAUUUUAAAGUGAUAAACGUGCCCAAAAGGUGAGUUUAGUCCGGAAAUUCAUACUG-CUCUAAAGAA ...-..((((.....(((((((((((.-.....)))))))))))(((((..(((.....)))..)))))..............))))-.......... ( -17.20) >DroAna_CAF1 4530 97 - 1 UCG-GCUCGACAAAAUAGCUCUAAAAAAUAAUAAAUAAAAGCGAAAAACGUGAGCAAAAGGUAGGUCAAACUCUGUGCAACACCCAGAUACUAAAGAA ...-(((((........(((...................)))........)))))....(((((......)((((.(.....).))))))))...... ( -10.30) >consensus UUU_AAUAGUCAAUUUCACUUUAAAAG_CUGUAUUUUAAAGUGAUAAACGUGCACAAAAGGUGAGUUUAGCACGGAAAAUCACACUG_CACUAAAGAA ...............(((((((((((.......)))))))))))................((((.(((.......))).))))............... ( -9.24 = -9.72 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:18:01 2006