Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,533,642 – 5,533,760 |
Length | 118 |
Max. P | 0.832082 |
Location | 5,533,642 – 5,533,760 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 77.49 |
Mean single sequence MFE | -32.68 |
Consensus MFE | -19.17 |
Energy contribution | -17.87 |
Covariance contribution | -1.30 |
Combinations/Pair | 1.41 |
Mean z-score | -1.70 |
Structure conservation index | 0.59 |
SVM decision value | 0.46 |
SVM RNA-class probability | 0.746144 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5533642 118 + 22407834 UUAUGCCCUGGCGAAUCAUCAGCACCCUGCUGAUGACUCAACCAAGAGCUUAUCUUCAAGAGAGAUUCGCUGUUUUACUGGAACGGGAAACCAUAGUAACGUAGGUUAUAUCAUUGCU ....((....))((.((((((((.....)))))))).))((((((.(((..(((((.....)))))..))).))((((((....((....)).))))))....))))........... ( -36.00) >DroSim_CAF1 7670 118 + 1 UUAUGCCCUGGCGAAUCAUCAGCACCCUGCUGAUGACGCAACCAAGAGCUUAUCUUCAAGAGAGAUUCGCUGUUUUACUGGAACGGGAGUCCAUAGUAACGUAGGUUAUAGCAUUGCU ..((((....(((..((((((((.....)))))))))))((((((.(((..(((((.....)))))..))).))((((((((.(....))))..)))))....))))...)))).... ( -35.60) >DroEre_CAF1 7722 118 + 1 UUAUGCCCUGGCGAAUCAUCAGCACCCUGCUGAUGACACAACCAAGAGCUUAUCUUCAAGAGAGGUUCGCUGUUUUACUGGAGCGGGAAUCCAUAGUAACGUAAGUUAUGCCACUGCU ....((..((((...((((((((.....)))))))).....((..((((((.((.....)).))))))(((.(......).))))).........(((((....)))))))))..)). ( -38.00) >DroWil_CAF1 7795 114 + 1 UUAUGCCUUGGCGAAUUGUUGGCACAUUGUUAAUGACCCAACCGCGGGCAUAUCUUCAAGAACGUUUUGCCAUGCUACUGGAUAAAGAACCAAUAGUCACGUAAGCU----CACUUGU .(((((((..(((....(((((..(((.....)))..)))))))))))))))....((((...((((.((...((((.(((........))).))))...)))))).----..)))). ( -27.00) >DroYak_CAF1 7740 111 + 1 UUAUGCCCUGGCGAAUCAUCAGCACCCUGCUGAUGACACAACCAAGAGCCUAUCUCCAGGAGAGGUUCGCUGUCCUACUGGAAAGGGAAUCCAUAGUGACGUAAGUUAA-------CC ((((((((((((...((((((((.....)))))))).........((((((.((.....)).))))))))).(((....))).))))....)))))((((....)))).-------.. ( -37.50) >DroAna_CAF1 7420 111 + 1 UUAUGCCUUGGCGAAUCAUUAGUACUCUUUUAAUGACACAACCCAGAGCCUAUCUACAGGAAAGAUUUUCCAUCCUCAUGGAAAGCGAGUCCAUAGUUACGUAAGUUUA-------CG ....((.((((....(((((((.......)))))))......)))).)).........(((..(.((((((((....)))))))))...)))...((.((....))..)-------). ( -22.00) >consensus UUAUGCCCUGGCGAAUCAUCAGCACCCUGCUGAUGACACAACCAAGAGCUUAUCUUCAAGAGAGAUUCGCUGUUCUACUGGAAAGGGAAUCCAUAGUAACGUAAGUUAU__CA_UGCU (((((...(((((((((((((((.....))))))..............(((......)))...)))))))))......((((.......))))......))))).............. (-19.17 = -17.87 + -1.30)
Location | 5,533,642 – 5,533,760 |
---|---|
Length | 118 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 77.49 |
Mean single sequence MFE | -33.88 |
Consensus MFE | -22.34 |
Energy contribution | -23.07 |
Covariance contribution | 0.73 |
Combinations/Pair | 1.25 |
Mean z-score | -1.56 |
Structure conservation index | 0.66 |
SVM decision value | 0.72 |
SVM RNA-class probability | 0.832082 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5533642 118 - 22407834 AGCAAUGAUAUAACCUACGUUACUAUGGUUUCCCGUUCCAGUAAAACAGCGAAUCUCUCUUGAAGAUAAGCUCUUGGUUGAGUCAUCAGCAGGGUGCUGAUGAUUCGCCAGGGCAUAA .((................(((((((((....))))...)))))...(((..(((((....).))))..)))((((((.(((((((((((.....))))))))))))))))))).... ( -37.10) >DroSim_CAF1 7670 118 - 1 AGCAAUGCUAUAACCUACGUUACUAUGGACUCCCGUUCCAGUAAAACAGCGAAUCUCUCUUGAAGAUAAGCUCUUGGUUGCGUCAUCAGCAGGGUGCUGAUGAUUCGCCAGGGCAUAA ....((((...........(((((((((....))))...)))))...(((..(((((....).))))..)))((((((.(.(((((((((.....))))))))).))))))))))).. ( -34.80) >DroEre_CAF1 7722 118 - 1 AGCAGUGGCAUAACUUACGUUACUAUGGAUUCCCGCUCCAGUAAAACAGCGAACCUCUCUUGAAGAUAAGCUCUUGGUUGUGUCAUCAGCAGGGUGCUGAUGAUUCGCCAGGGCAUAA .((((((((.........)))))).((((.......))))........))...................((.((((((...(((((((((.....)))))))))..)))))))).... ( -34.90) >DroWil_CAF1 7795 114 - 1 ACAAGUG----AGCUUACGUGACUAUUGGUUCUUUAUCCAGUAGCAUGGCAAAACGUUCUUGAAGAUAUGCCCGCGGUUGGGUCAUUAACAAUGUGCCAACAAUUCGCCAAGGCAUAA .((((..----......((((.(((((((........)))))))))))..........))))....((((((.((((((((..(((.....)))..)))))....)))...)))))). ( -32.17) >DroYak_CAF1 7740 111 - 1 GG-------UUAACUUACGUCACUAUGGAUUCCCUUUCCAGUAGGACAGCGAACCUCUCCUGGAGAUAGGCUCUUGGUUGUGUCAUCAGCAGGGUGCUGAUGAUUCGCCAGGGCAUAA ((-------((..((...(((.(((((((.......)))).))))))))..))))((((...))))...((.((((((...(((((((((.....)))))))))..)))))))).... ( -39.80) >DroAna_CAF1 7420 111 - 1 CG-------UAAACUUACGUAACUAUGGACUCGCUUUCCAUGAGGAUGGAAAAUCUUUCCUGUAGAUAGGCUCUGGGUUGUGUCAUUAAAAGAGUACUAAUGAUUCGCCAAGGCAUAA ((-------((....))))...(((((((.....(((((((....))))))).....))).))))....((.((.(((...(((((((.........)))))))..))).)))).... ( -24.50) >consensus AGCA_UG__AUAACUUACGUUACUAUGGAUUCCCGUUCCAGUAAAACAGCGAAUCUCUCUUGAAGAUAAGCUCUUGGUUGUGUCAUCAGCAGGGUGCUGAUGAUUCGCCAGGGCAUAA ..................(((....((((.......))))....)))......................((.((((((...(((((((((.....)))))))))..)))))))).... (-22.34 = -23.07 + 0.73)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:58 2006