Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,517,269 – 5,517,371 |
Length | 102 |
Max. P | 0.989368 |
Location | 5,517,269 – 5,517,371 |
---|---|
Length | 102 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 72.70 |
Mean single sequence MFE | -28.45 |
Consensus MFE | -19.00 |
Energy contribution | -18.23 |
Covariance contribution | -0.77 |
Combinations/Pair | 1.17 |
Mean z-score | -1.83 |
Structure conservation index | 0.67 |
SVM decision value | 2.16 |
SVM RNA-class probability | 0.989368 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5517269 102 + 22407834 AGCGGGAAUGGAGUUGGAGUCUACUCGCAACUGGAAGAAGUUCAAGUUGAGGAUGUGCC---AGUUGCUAAUAAAGCGAUUUAAGAGGU--UUCAUUCAUUCA-------------AAAA .....(((((((..((((..((.((.((((((((.....((((.......))))...))---))))))...((((....))))))))..--))))))))))).-------------.... ( -27.10) >DroSim_CAF1 147702 114 + 1 AA-GGGAAUGAAGCUUAAAUCUUCUCGCAACUGGAAGAAGUUCAAGUUGAGGAUGUGCC---AGUUGCUAAUAAAGCGAUUUAAGAGGU--UUCAUUCAUUCACUUACGUAGGAGACAAA ..-..((((((((((((((((.....((((((((.....((((.......))))...))---)))))).........))))))...)))--))))))).............(....)... ( -30.04) >DroYak_CAF1 146488 106 + 1 GACGGGAAUGGAGUUGGAGUCUCGUCUCAGCUGUGAGAAG------UGGAGGAUGGGCCGGUAGUUGCUAAUAAAGCGAUUUGGGAGGCGAUUCAUUCAUGC--------AGGUAAAAAA .((..(.(((((....((((((((((((.(((......))------).)).)))))(((...(((((((.....))))))).....)))))))).))))).)--------..))...... ( -28.20) >consensus AACGGGAAUGGAGUUGGAGUCUACUCGCAACUGGAAGAAGUUCAAGUUGAGGAUGUGCC___AGUUGCUAAUAAAGCGAUUUAAGAGGU__UUCAUUCAUUCA_______AGG__AAAAA .....(((((((.......(((((.(......))))))..................(((...(((((((.....))))))).....)))..)))))))...................... (-19.00 = -18.23 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:54 2006