Locus 2043

Sequence ID 2L_DroMel_CAF1
Location 5,515,856 – 5,515,947
Length 91
Max. P 0.892981
window3290

overview

Window 0

Location 5,515,856 – 5,515,947
Length 91
Sequences 3
Columns 101
Reading direction reverse
Mean pairwise identity 78.50
Mean single sequence MFE -36.40
Consensus MFE -25.94
Energy contribution -24.62
Covariance contribution -1.32
Combinations/Pair 1.24
Mean z-score -1.82
Structure conservation index 0.71
SVM decision value 0.97
SVM RNA-class probability 0.892981
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5515856 91 - 22407834
GAGCUGUUGAAGUGGCAAAUUCGCACAGCGCCACCAUUCCACUGGCUCGUUUUUUGGGGGGUA--CGGUUGGAGGUGGGUUA--------GCGGGUGGUUU
..(((((((((........)))).)))))((((((.((((((((((((.((....)).)))).--))).)))))((......--------)).)))))).. ( -30.80)
>DroSim_CAF1 146314 89 - 1
GAGCUGUUGAAGUGGCAAAUUCGCACAGCGCCACCAUUCCACUGGCUCGCUUUUGGGCGGGU----GGUUGGAGGUGGGUUA--------GCGGGUGGUUU
..(((((((((........)))).)))))...(((((.((.((((((((((((..(.(....----).)..)))))))))))--------).))))))).. ( -36.70)
>DroYak_CAF1 145090 100 - 1
GAGCUGUUGAAGUGGCAAAUUCGCACAGCGCCACCAUUCCAUUUGCC-AUUGCUCGGGUGGUUGCAGGUUGAAGGUGGGCUGUUGGGCUGUUGGGUGGCUC
((((..((..((..((....(((.(((((.(((((.(((.((((((.-((..(....)..)).)))))).))))))))))))))))))..)).))..)))) ( -41.70)
>consensus
GAGCUGUUGAAGUGGCAAAUUCGCACAGCGCCACCAUUCCACUGGCUCGUUUUUCGGGGGGU____GGUUGGAGGUGGGUUA________GCGGGUGGUUU
..(((((((((........)))).)))))((((((..((((((.(((.(((((....)))))....)))....))))))..............)))))).. (-25.94 = -24.62 +  -1.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:53 2006