Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 607,459 – 607,567 |
Length | 108 |
Max. P | 0.958151 |
Location | 607,459 – 607,567 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 96.37 |
Mean single sequence MFE | -31.56 |
Consensus MFE | -30.14 |
Energy contribution | -30.54 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.46 |
Structure conservation index | 0.96 |
SVM decision value | 1.49 |
SVM RNA-class probability | 0.958151 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 607459 108 - 22407834 CUCUGCGGUUGGUUUCGGUUUCAGCCA----ACCACUCACUCGGUCUAGCCUUUGACUU-GGCCAUAAUACUCCCUGGUAUAAUGCCGCGGAUUGCCAAUGCCGCGCCUCUAA ....((((((((((..(((....))))----)))).......(((...(((........-)))........(((.((((.....)))).)))..)))...)))))........ ( -28.70) >DroSec_CAF1 38891 108 - 1 CUCUGCGGUUGGUUUCGGUUUCAGCCA----ACCACUCACUCGGUCUAGCCUUUGACUU-UGCCAUAAUACUCCCUGGUAUUAUGCCUCGGAUUGCCAAUGCCGCGCCUCUAA ....(((((((((...(((....))).----.((........((((........)))).-.(.(((((((((....))))))))).)..))...))))..)))))........ ( -28.00) >DroSim_CAF1 37287 108 - 1 CUCUGCGGUUGGUUUCGGUUUCAGCCA----ACCACUCACUCGGUCUAGCCUUUGACUU-GGCCAUAAUACUCCCUGGUAUUAUGCCGCGGAUUGCCAAUGCCGCGCCUCUAA ....(((((((((.((((((......)----))).....(.(((....(((........-)))(((((((((....)))))))))))).)))..))))..)))))........ ( -32.30) >DroEre_CAF1 39381 113 - 1 CUCUGCGGUUGGUUUCGGUUUCAGCCAACCAACCACUCACUCGGUCUAGCCUUUGACUUUGGCCAUAAUACUGCCUGGUAUUAUGCCGCGGAUUGCCAAUGCCGCGCCUCUAA ....((((((((((..(((....)))))))))))........((((........))))..(((.((((((((....)))))))))))((((..........))))))...... ( -35.90) >DroYak_CAF1 39353 109 - 1 CUCUGCGGUUGGUUUCGGUUUCAGCCA----ACCACUCACUCGGUCUAGCCUUUGACUUUGGCCAUAAUACUGCCUGGUAUUAUGCCGCGGAUUGCCAAUGCCGCGCCUCUAA ....((((((((((........)))))----)))........((((........))))..(((.((((((((....)))))))))))((((..........))))))...... ( -32.90) >consensus CUCUGCGGUUGGUUUCGGUUUCAGCCA____ACCACUCACUCGGUCUAGCCUUUGACUU_GGCCAUAAUACUCCCUGGUAUUAUGCCGCGGAUUGCCAAUGCCGCGCCUCUAA ....(((((((((...(((....)))......((........((((........))))..(((.((((((((....)))))))))))..))...))))..)))))........ (-30.14 = -30.54 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:14 2006