Locus 2039

Sequence ID 2L_DroMel_CAF1
Location 5,501,834 – 5,501,933
Length 99
Max. P 0.978424
window3283

overview

Window 3

Location 5,501,834 – 5,501,933
Length 99
Sequences 6
Columns 117
Reading direction reverse
Mean pairwise identity 92.95
Mean single sequence MFE -22.69
Consensus MFE -20.71
Energy contribution -20.71
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.80
Structure conservation index 0.91
SVM decision value 1.81
SVM RNA-class probability 0.978424
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5501834 99 - 22407834
-----------GUGCU-------GCGUUAUUAUGAUCUUUUAAUAGCCCGCAAUUUUCUCACCUCGCAAAGUGUGAAUAUUAUGGUGUAAUUGCAUCAACGCAUCAACUCCUACCAA
-----------.((.(-------(((((((((........)))))))..((((((....((((((((.....)))).......)))).))))))......))).))........... ( -21.51)
>DroPse_CAF1 142059 99 - 1
-----------GUGCA-------ACGUUAUUAUGAUCUUUUAAUAGCCCGCAAUUUUCUCACCUCGCAAAGUGUGAAUAUUAUGGUGUAAUUGCAUCAACGCAUCAACUCCUACCAA
-----------((((.-------..(((((((........)))))))..((((((....((((((((.....)))).......)))).))))))......))))............. ( -21.01)
>DroEre_CAF1 123411 99 - 1
-----------GUGCU-------GCGUUAUUAUGAUCUUUUAAUAGCCCGCAAUUUUCUCACCUCGCAAAGUGUGAAUAUUAUGGUGUAAUUGCAUCAACGCAUCAACUCCUACCAA
-----------.((.(-------(((((((((........)))))))..((((((....((((((((.....)))).......)))).))))))......))).))........... ( -21.51)
>DroWil_CAF1 177799 117 - 1
UCGGCGGCUUCGUGCUGGAGAGCGAGUUAUUAUGAUCUUUUAAUAGCCCGCAAUUUUCUCACCUCGCAAAGUGUGAAUAUUAUGGUGUAAUUGCAUCAACGCAUCAACUCCUACCAA
..((.(((.....)))((((.(((.(((((((........))))))).)))(((.(((.(((........))).))).))).((((((....)))))).........))))..)).. ( -29.60)
>DroYak_CAF1 130365 99 - 1
-----------GUGCU-------GCGUUAUUAUGAUCUUUUAAUAGCCCGCAAUUUUCUCACCUCGCAAAGUGUGAAUAUUAUGGUGUAAUUGCAUCAACGCAUCAACUCCUACCAA
-----------.((.(-------(((((((((........)))))))..((((((....((((((((.....)))).......)))).))))))......))).))........... ( -21.51)
>DroPer_CAF1 142562 99 - 1
-----------GUGCA-------ACGUUAUUAUGAUCUUUUAAUAGCCCGCAAUUUUCUCACCUCGCAAAGUGUGAAUAUUAUGGUGUAAUUGCAUCAACGCAUCAACUCCUACCAA
-----------((((.-------..(((((((........)))))))..((((((....((((((((.....)))).......)))).))))))......))))............. ( -21.01)
>consensus
___________GUGCU_______GCGUUAUUAUGAUCUUUUAAUAGCCCGCAAUUUUCUCACCUCGCAAAGUGUGAAUAUUAUGGUGUAAUUGCAUCAACGCAUCAACUCCUACCAA
...........((((..........(((((((........)))))))..((((((....((((((((.....)))).......)))).))))))......))))............. (-20.71 = -20.71 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:47 2006