Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,501,610 – 5,501,701 |
Length | 91 |
Max. P | 0.640991 |
Location | 5,501,610 – 5,501,701 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 92 |
Reading direction | reverse |
Mean pairwise identity | 89.56 |
Mean single sequence MFE | -35.33 |
Consensus MFE | -28.89 |
Energy contribution | -29.03 |
Covariance contribution | 0.14 |
Combinations/Pair | 1.28 |
Mean z-score | -2.04 |
Structure conservation index | 0.82 |
SVM decision value | 0.22 |
SVM RNA-class probability | 0.640991 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5501610 91 - 22407834 CCAGAGCGAUCCAAUGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUGUGGUCGCUCUUCGGUUUGCACUGAAA- ...(((((((((((((((.....)))((((((((.((.......)).))))))))......)))).))))))))((((((....)))))).- ( -41.40) >DroSec_CAF1 125279 91 - 1 CCAGAGCGAUCCAAUGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUGUGGUCUCUCUUCGGUUUGCACUCAAA- .((((.(((......(((((((.(((.(((((((.((.......)).))))))))))...))..)))))......))).))))........- ( -33.70) >DroSim_CAF1 132086 91 - 1 CCAGAGCGAUCCAAUGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUGUGGUCUCUCUUCGGUUUGCACUGAAA- ...(((.(((((((((((.....)))((((((((.((.......)).))))))))......)))).)))).)))((((((....)))))).- ( -35.60) >DroEre_CAF1 123209 91 - 1 CCAGAGCGAUCCGACGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUGUGGUCUCUCUUCGGCGUGCACUGGAA- ((((.(((..((((.(((((((.(((.(((((((.((.......)).))))))))))...))..)))))......))))..))).))))..- ( -39.90) >DroYak_CAF1 130156 92 - 1 CCAGAGCGAUCCAACGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAAGUUGUGGUCUCUCUUCAGCUUGCACUGAAAA ...(((.(((((((((((.....)))((((((((.((.......)).))))))))......)))).)))).)))(((((......))))).. ( -37.90) >DroAna_CAF1 130391 89 - 1 CCAGAGCGAUCCG-CGCCGCCGGGCUCGGC-CCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUAAGGUUGUUUCCGAAACUCCACUGAAA- .(((.(((..(((-.(((....))).)))(-(((.((.......)).))))..))).....(((..((......))..)))....)))...- ( -23.50) >consensus CCAGAGCGAUCCAACGCCGCCGGGGCCGGCCCCAUCAUAACUUCUGUUGGGGCCGCCAAAUGUUGUGGUCUCUCUUCGGUUUGCACUGAAA_ ...(((.(((((((((((.....)))((((((((.((.......)).))))))))......)))).)))).)))(((((......))))).. (-28.89 = -29.03 + 0.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:46 2006