Locus 2036

Sequence ID 2L_DroMel_CAF1
Location 5,498,427 – 5,498,522
Length 95
Max. P 0.505839
window3279

overview

Window 9

Location 5,498,427 – 5,498,522
Length 95
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 85.76
Mean single sequence MFE -20.68
Consensus MFE -20.27
Energy contribution -19.58
Covariance contribution -0.69
Combinations/Pair 1.21
Mean z-score -1.05
Structure conservation index 0.98
SVM decision value -0.05
SVM RNA-class probability 0.505839
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5498427 95 - 22407834
AAAAAAGUUGAGAGCAGACUUAAUGGCGUCACUUGUGUUUAAAAUUUAUUUUAUGAUGCGCACGCUAAGCCACAGUUGAAUUUUAAAAUAUACCC-------------------------
.......((((((...((((...((((....(.(((((.(((((....)))))....))))).)....)))).))))...)))))).........------------------------- ( -16.30)
>DroPse_CAF1 138468 112 - 1
AAAAAAGUUGAAAGCAGACUUAAUGGCGCCACUUGCGCUUAAAAUUUAUUUUAUGAUGCGCAUGCUAAGCCACAGUUGAAUUUUAAAAUACAUCCA---AC-ACACGCACACACAG----
.......((((((...((((...((((......(((((.(((((....)))))....)))))......)))).))))...))))))..........---..-..............---- ( -20.40)
>DroWil_CAF1 173156 113 - 1
AAAAAAGUUGAAAGCAGACUUAAUGGCGCCACUUGCGCUUAAAAUUUAUUUUAUGAUGCGCAUGCUAAGCCACAGUUGAAUUUUAAAAUACACUCA---UCUACACACACACACAA----
.......((((((...((((...((((......(((((.(((((....)))))....)))))......)))).))))...))))))..........---.................---- ( -20.40)
>DroMoj_CAF1 189388 113 - 1
AAAAAAGUUAAAAGCAGACUUAAUGGCGCCACUUGCGCUUAAAAUUUAUUUUAUGAUGCGCAUGCUAAGCCGCAGUUGAAUUUUAAAAUACAU-------CGAGUCGCACACAGAGUAAG
.............((.((((..(((((((.....))))((((((((((........(((((.......).))))..))))))))))....)))-------..))))))............ ( -24.70)
>DroAna_CAF1 127396 113 - 1
AAAAAAGUUGAAAGCAGACUUAAUGGCGCCCCUUGCGCUUAAAAUUUAUUUUAUGAUGCGCAUGCUAAGCCACAGUUGAAUUUUAAAAUACAUCCUCGCAG-AGUCGCAUACAC------
.......((((((...((((...((((......(((((.(((((....)))))....)))))......)))).))))...))))))...........((..-....))......------ ( -21.90)
>DroPer_CAF1 139044 112 - 1
AAAAAAGUUGAAAGCAGACUUAAUGGCGCCACUUGCGCUUAAAAUUUAUUUUAUGAUGCGCAUGCUAAGCCACAGUUGAAUUUUAAAAUACAUCCA---AC-ACACGCACACACAG----
.......((((((...((((...((((......(((((.(((((....)))))....)))))......)))).))))...))))))..........---..-..............---- ( -20.40)
>consensus
AAAAAAGUUGAAAGCAGACUUAAUGGCGCCACUUGCGCUUAAAAUUUAUUUUAUGAUGCGCAUGCUAAGCCACAGUUGAAUUUUAAAAUACAUCCA___AC_ACACGCACACACAG____
.......((((((...((((...((((......(((((.(((((....)))))....)))))......)))).))))...)))))).................................. (-20.27 = -19.58 +  -0.69)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:43 2006