Locus 2034

Sequence ID 2L_DroMel_CAF1
Location 5,496,157 – 5,496,253
Length 96
Max. P 0.548704
window3276

overview

Window 6

Location 5,496,157 – 5,496,253
Length 96
Sequences 5
Columns 96
Reading direction forward
Mean pairwise identity 71.72
Mean single sequence MFE -11.98
Consensus MFE -0.70
Energy contribution -1.94
Covariance contribution 1.24
Combinations/Pair 1.14
Mean z-score -1.48
Structure conservation index 0.06
SVM decision value 0.03
SVM RNA-class probability 0.548704
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5496157 96 + 22407834
GAAUCAAAAAAUGGUACAUAAAUUCCCGUACUUUCUAAAUUGUAACAUUUAUACUUAUACCAUUUUGCCAGAUAGAUCAUGUUUGGAUCCAAACUC
.......(((((((((.((((((.....(((..........)))..)))))).....))))))))).(((((((.....))))))).......... ( -14.60)
>DroSec_CAF1 119957 96 + 1
GAAUAAAAAAAUCGUACAUAAACUUCCCUACUUUCUAAAUUGUACCAUUUAUACUUAUACCAUUUUGCCGGAUAGAUCCUGUUUGGAUCCAAACUC
........((((.(((((......................))))).)))).........((........))...(((((.....)))))....... ( -11.25)
>DroSim_CAF1 126758 96 + 1
GAAUAAAAAAAUGGUACAUAAACUUCCCUACUUUCUAAAUUGUACCAUUUAUACUUAUACCAUUUUGCCAGAUAGAUCCUGUUUGGAUCCAAACUC
........((((((((((......................)))))))))).................((((((((...)))))))).......... ( -17.75)
>DroEre_CAF1 117495 79 + 1
GAUUAAAAAAUU-UUAUAUAAGUUUUCCUACUUUCUAAAU---------------AAUACCAUUUUACCAGCGACAUCCUGUUGCA-UCCAAACUC
...........(-(((...((((......))))..)))).---------------...............(((((.....))))).-......... (  -7.40)
>DroYak_CAF1 124307 73 + 1
UGAUAAAAAAUUGUCAUAGAAGUUUUCCCACUUUCUAAAC---------------UAUACCAUUUUGCUGGAGAUAUCCUGUUUUG-----AU---
((((((....))))))(((((((......)).)))))...---------------.....((....((.(((....))).))..))-----..--- (  -8.90)
>consensus
GAAUAAAAAAAUGGUACAUAAAUUUCCCUACUUUCUAAAUUGUA_CAUUUAUACUUAUACCAUUUUGCCAGAUAGAUCCUGUUUGGAUCCAAACUC
...................................................................(((((((.....))))))).......... ( -0.70 =  -1.94 +   1.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:40 2006