| Sequence ID | 2L_DroMel_CAF1 |
|---|---|
| Location | 5,495,458 – 5,495,556 |
| Length | 98 |
| Max. P | 0.537133 |
| Location | 5,495,458 – 5,495,556 |
|---|---|
| Length | 98 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 78.35 |
| Mean single sequence MFE | -14.71 |
| Consensus MFE | -7.04 |
| Energy contribution | -7.04 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.00 |
| Structure conservation index | 0.48 |
| SVM decision value | 0.01 |
| SVM RNA-class probability | 0.537133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5495458 98 - 22407834 UUACAUACGGCA-AACAUCAAUGCAGACAACAAAACUUUUUUAAACUGCAGAUAAAAAUCAGCAAAGCGGC------GCACACAC--------UGCGAAACAAAUGUGCAAAA------- .(((((...((.-........(((((...................)))))(((....))).))...((((.------(....).)--------))).......))))).....------- ( -14.11) >DroVir_CAF1 167679 88 - 1 UUACAUACAGCA-AACAUCAAUGCAGACAACAAA--UUCUUUUAACUGCAGAUAAAAAUCAGCAAC-----------------------------UGAAACAAAAGUGAAACAAGACAAA ((((.....(((-........)))..........--...(((((..(((.(((....))).)))..-----------------------------))))).....))))........... ( -8.70) >DroPse_CAF1 134867 96 - 1 UUACAUACAGCA-AACAUCAAUGCAGACAACAAAACUUUUUUAAACUGCAGAUAAAAAUCAGCAAAGCGCA------CCAC-CAC--------GGUGGAACAAAUGUG-AAAA------- ((((((...((.-........(((((...................)))))(((....)))........)).------((((-...--------.)))).....)))))-)...------- ( -17.61) >DroWil_CAF1 169046 105 - 1 UUACAUACAGCAAAACAUCAAUGCAGACAACAAAAUUUUUGU-AACUGCAGAUAAAAAUCAGCAAAGCGAGCAAACCUAACAUAC--------U---GAACAAAAGUGUAGAA-GAUA-- .........((..........(((((...((((.....))))-..)))))(((....))).))..................((((--------(---.......)))))....-....-- ( -12.80) >DroAna_CAF1 124308 105 - 1 UUACAUACGGCA-AACAUCAAUGCAGACAACAAAACUUUUUUAAACUGCAGAUAAAAAUCAGCAAAGCGGC------GCACACACUCUAAGCCUGCGAAACAAAUGUG-AAAA------- ((((((...((.-........(((((...................)))))(((....))).))...((((.------((...........)))))).......)))))-)...------- ( -17.41) >DroPer_CAF1 135425 96 - 1 UUACAUACAGCA-AACAUCAAUGCAGACAACAAAACUUUUUUAAACUGCAGAUAAAAAUCAGCAAAGCGCA------CCAC-CAC--------GGUGGAACAAAUGUG-AAAA------- ((((((...((.-........(((((...................)))))(((....)))........)).------((((-...--------.)))).....)))))-)...------- ( -17.61) >consensus UUACAUACAGCA_AACAUCAAUGCAGACAACAAAACUUUUUUAAACUGCAGAUAAAAAUCAGCAAAGCGCA______CCAC_CAC________UGUGAAACAAAUGUG_AAAA_______ .........((..........(((((...................)))))(((....))).))......................................................... ( -7.04 = -7.04 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:39 2006