Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 607,037 – 607,155 |
Length | 118 |
Max. P | 0.767135 |
Location | 607,037 – 607,155 |
---|---|
Length | 118 |
Sequences | 5 |
Columns | 118 |
Reading direction | forward |
Mean pairwise identity | 92.46 |
Mean single sequence MFE | -27.95 |
Consensus MFE | -22.54 |
Energy contribution | -23.38 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.06 |
Mean z-score | -1.60 |
Structure conservation index | 0.81 |
SVM decision value | 0.52 |
SVM RNA-class probability | 0.767135 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 607037 118 + 22407834 GUUGCUGUGGUCGCCCCGGCAGCAACAAGGCACUUGUAAAAAUACAUAAUUAAAUAGAGGUUUAAGUGGUUAUUAAAAGAGGAACAUGCUAUGUGUUUAACCAAACAAGUCCUAACCA ((((((((.(......).)))))))).(((.((((((............((((((....)))))).((((((..........(((((.....))))))))))).)))))))))..... ( -30.60) >DroSec_CAF1 38473 114 + 1 GUUGCUGUGGUCGCCCCUGCAGCAACAAGGCACUUGUAAAAAUACAUAAUUAAAUCGAGGUUUAACUGGUUAUUAAAAAAGGAACGUGCUAUGUGUUUAACCAAACAAGUCCC----A (((((((..(......)..)))))))..((.((((((..(((((((((.((((((....))))))((..((....))..))........)))))))))......)))))).))----. ( -30.10) >DroSim_CAF1 36865 118 + 1 GUUGCUGUGGUCGCCCCUGCAGCAACAAGGCACUUGUAAAAAUACAUAAUUAAAUCGAGGUUUAACUGGUUAUUAAAAAAGGAACGUGCUAUGUGUUUAACCCAACAAGUCCCAACCA (((((((..(......)..)))))))..((.((((((..(((((((((.((((((....))))))((..((....))..))........)))))))))......)))))).))..... ( -30.10) >DroEre_CAF1 38935 118 + 1 GUUGCUGUGGUCGCCCCUGCAGCAAGCAGGCACUUGUAAAAAUACAUAAUUAAAUGGAGGUUUAACUGGUUAUUAAAAAAGGUACAUGCUAUGUGUUUAACCAAACAAGUCUUAACCA .((((((..(......)..))))))..(((.((((((..((((.(((......)))...))))...((((((........(((....))).......)))))).)))))))))..... ( -24.66) >DroYak_CAF1 38948 118 + 1 GUCGCUGUGGUCGCCCCUGCAGCAACCAGUCACUUGUAAAAAUACAUAAUUAAAUGGAGGCUUAACUGGUUAUUAAAAAAGGUACAUGCUAUGUGUUUAACCAAACAAGUCUUUACCA ...((((..(......)..))))..(((......((((....))))........)))((((((...((((((........(((....))).......))))))...))))))...... ( -24.30) >consensus GUUGCUGUGGUCGCCCCUGCAGCAACAAGGCACUUGUAAAAAUACAUAAUUAAAUCGAGGUUUAACUGGUUAUUAAAAAAGGAACAUGCUAUGUGUUUAACCAAACAAGUCCUAACCA ((((((((((......))))))))))..((.((((((............((((((....)))))).((((((.......((.......)).......)))))).)))))).))..... (-22.54 = -23.38 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:13 2006