Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,489,302 – 5,489,394 |
Length | 92 |
Max. P | 0.933739 |
Location | 5,489,302 – 5,489,394 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 98 |
Reading direction | reverse |
Mean pairwise identity | 77.38 |
Mean single sequence MFE | -27.10 |
Consensus MFE | -16.86 |
Energy contribution | -18.23 |
Covariance contribution | 1.37 |
Combinations/Pair | 1.38 |
Mean z-score | -2.01 |
Structure conservation index | 0.62 |
SVM decision value | 1.23 |
SVM RNA-class probability | 0.933739 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5489302 92 - 22407834 ACAAGGAUAAGGGACAAGGGGUUGGGUUUCGAGCAUAUCUGUAUCUAUGGAUAU------GAAGGAACCCAGUAAGGGUUGUUAAUCCGGCGUAACUC ....((((.((.(((.....((((((((((...(((((((((....))))))))------)..))))))))))....))).)).)))).......... ( -30.00) >DroSec_CAF1 113099 92 - 1 ACAAGGAUAAGGCACAAGGGGUUGGGUUCCGAGCAUAUCUGUAUCUAUGGAUAU------GAAGGAACCCAGUAAGGGUUGUUAAUCCGGCGUAACUC ....((((..((((.......(((((((((...(((((((((....))))))))------)..))))))))).......)))).)))).......... ( -29.74) >DroSim_CAF1 119724 92 - 1 ACAAGGAUAAGGCACAAGGGGUUGGGUUCCGAGCAUAUCUGUAUCUAUGGAUAU------GAAGGAACCCAGUAAGGGUUGUUAAUCCGGCGUAACUC ....((((..((((.......(((((((((...(((((((((....))))))))------)..))))))))).......)))).)))).......... ( -29.74) >DroEre_CAF1 110526 92 - 1 GCAAGGAUAAGGGACAAGGGGUUGGGUUUCAACCAUAUCUGUAUCUAUGGAUAU------GAAGGAACCCAGUAAGGGUUGUUAAUCCAGCGUAACUC ((..((((.((.(((.....((((((((((...(((((((((....))))))))------)..))))))))))....))).)).)))).))....... ( -28.60) >DroYak_CAF1 117486 75 - 1 CCAGGGAUAAGGGACAAGGGGUU-----------------GUAUCUAUGGAUAU------GGAGGAACCCGGUAAGGGUUGUUAAUCCAGCGUAACUC (((.(((((...(((.....)))-----------------.))))).)))...(------((((.(((((.....))))).)...))))......... ( -18.90) >DroAna_CAF1 117598 97 - 1 GCAAGGGGUUGGGAUUAAGGAAAGGGAUACGAUACGGCCUAUAUACUCGUAUAUUUGUGCCGA-GGGCCCAGUAAGGGUUGCUAAUCCAGCGGAACUU ((...(((((((......................(((((.(((((....)))))..).)))).-.(((((.....))))).))))))).))....... ( -25.60) >consensus ACAAGGAUAAGGGACAAGGGGUUGGGUUCCGAGCAUAUCUGUAUCUAUGGAUAU______GAAGGAACCCAGUAAGGGUUGUUAAUCCAGCGUAACUC ....((((.((.(((.....((((((((((..........(((((....))))).........))))))))))....))).)).)))).......... (-16.86 = -18.23 + 1.37)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:30 2006