Locus 2027

Sequence ID 2L_DroMel_CAF1
Location 5,483,071 – 5,483,176
Length 105
Max. P 0.746102
window3263

overview

Window 3

Location 5,483,071 – 5,483,176
Length 105
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.65
Mean single sequence MFE -34.53
Consensus MFE -15.53
Energy contribution -15.70
Covariance contribution 0.17
Combinations/Pair 1.18
Mean z-score -2.14
Structure conservation index 0.45
SVM decision value 0.46
SVM RNA-class probability 0.746102
Prediction RNA

Download alignment: ClustalW | MAF

>2L_DroMel_CAF1 5483071 105 - 22407834
AUCGAGCAGCACAAAUUGAGUUUAUUGCGCCGCCGCCUUAUUGCUGGCAAAUUACAGGUCGGCGCUUUUAACUUUGUG---GCAGGAUACACUGCAA------CUGCAAC----ACCA--
.....((((((((....(((((....(((((((((((........)))........)).))))))....)))))))))---((((......))))..------))))...----....-- ( -36.50)
>DroVir_CAF1 149623 100 - 1
GCU-GGCAGCGUAAAUUGAGUUUAUUGCGCCGCC---GUAUUGCAGGCAAAUUACAGGUCGGCGCAUUUAACUUUGUG---CCAGGAUAUG---AAA------GGG-GGC--AGAGACA-
.((-((((.((......(((((...(((((((((---((((((....)))..))).)).)))))))...)))))))))---))))......---...------...-...--.......- ( -31.40)
>DroGri_CAF1 159943 107 - 1
GCCGGGCAGCGUAAAUUGAGUUUAUUGCGCCGCC---GUAUUGCUGGCAAAUUACAGGUCGGCGCAUUUAACUUUGUGCUGCCAGGAUAUG---AAA------GGG-GGCCCAGAAACAG
.((.(((((((((....(((((...(((((((((---((((((....)))..))).)).)))))))...)))))))))))))).)).....---...------((.-...))........ ( -40.00)
>DroEre_CAF1 103465 111 - 1
AUCGAGCAGCACAAAUUGAGUUUAUUGCGCCGCCGCCUUAUUGCUGGCAAAUUACAGGUCGGCGCUUUUAACUUUGUG---GCAGGAUACACUGCAACUGCAACUGCAAC----ACUA--
.....((((((((....(((((....(((((((((((........)))........)).))))))....)))))))))---((((......))))..)))).........----....-- ( -36.50)
>DroWil_CAF1 149331 101 - 1
AUCGGUCAGAGCAAAUUGAGUUUAUUGCGACGCC---GUAUUACAGGCAAAUUACAGGUCGGCACAUUUUACUUUGUG---CCAGGAUAGG----AA------GGGGAGCG-AGAGAA--
.(((.((.((.(.......(((......)))(((---........)))........).))((((((........))))---))........----..------...)).))-).....-- ( -24.50)
>DroPer_CAF1 121928 105 - 1
AUCGAGCAGCACAAAUUGAGUUUACUGCGCCGACGCCUUAUUGCUGGCAAAUUACAGGUCGGCGCUUUUAACUUUGUG---GCAGGAUACCCUGUAA------GUGCAAC----UGCA--
.....((((((((....(((((....(((((((((((........))).........))))))))....)))))))))---(((((....)))))..------......)----))).-- ( -38.30)
>consensus
AUCGAGCAGCACAAAUUGAGUUUAUUGCGCCGCC___GUAUUGCUGGCAAAUUACAGGUCGGCGCAUUUAACUUUGUG___CCAGGAUACG___AAA______GGGCAAC____AGAA__
.((......((((....(((((....((((((((......(((....)))......)).))))))....)))))))))......)).................................. (-15.53 = -15.70 +   0.17)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:29 2006