Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,481,550 – 5,481,642 |
Length | 92 |
Max. P | 0.747646 |
Location | 5,481,550 – 5,481,642 |
---|---|
Length | 92 |
Sequences | 6 |
Columns | 111 |
Reading direction | reverse |
Mean pairwise identity | 75.97 |
Mean single sequence MFE | -23.90 |
Consensus MFE | -10.88 |
Energy contribution | -12.10 |
Covariance contribution | 1.22 |
Combinations/Pair | 1.07 |
Mean z-score | -2.06 |
Structure conservation index | 0.46 |
SVM decision value | 0.47 |
SVM RNA-class probability | 0.747646 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5481550 92 - 22407834 CAUGCAAAUGAGACAUUAGUCAAACGCAGUGGCCCAUCAGCCUGGUCCGCUGAAUAUCGGUCUAUAUAU----GUACAUAUA-----UA--U------GU--GAACAUAGA ........((((((....))).....((((((.(((......))).))))))....)))((.(((((((----((....)))-----))--)------))--).))..... ( -21.80) >DroSec_CAF1 100746 96 - 1 CAUGCAAAUGAGACAUUAGUCAAACGCAGUGGCCCAUCAGCCUGGUCCGCUGAAUAUCGGUCUAUAUGU----GUACAUAUA-----UA--UACGU--AU--GACCAUAGA (((....))).(((....))).....((((((.(((......))).))))))......((((.((((((----(((......-----))--)))))--))--))))..... ( -29.10) >DroSim_CAF1 112091 84 - 1 CAUGCAAAUGAGACAUUAGUCAAACGCAGCGGCCCAUCAGCCUGGUCCGCUGAAUAUCGGUCUAUAUGU----GUACAUAUA-----UA------------------UAGA ........((((((....))).....((((((.(((......))).))))))....))).(((((((((----(....))))-----))------------------)))) ( -24.40) >DroEre_CAF1 101922 102 - 1 CAUGCAAAUGAGACAUUAGUCAAACGCAGUGGCCCAUCAGCCUGGGCCGCUGAAUAUCGGGCUAUAUAU----GCACACAUA-----UACAUAUAUAUAUUACAGCAUAGA .((((...........(((((.....((((((((((......)))))))))).......)))))(((((----(....))))-----))...............))))... ( -31.70) >DroYak_CAF1 109353 105 - 1 CAUGCAAAUGAGACAUUAGUCAAACGCAGUGGCCCAUCAGCCUGGUCCGCUGAAUAUCGCUCCAUAUA------CAUAUAUACACGUUAUAUACGUACAUAACAACAUAGA ...((......(((....))).....((((((.(((......))).))))))......))......((------(.((((((.....)))))).))).............. ( -20.40) >DroAna_CAF1 108429 82 - 1 CAUGCAAAUGAGACAUUAGUCAAACGCACUGGCCCAUCAGCCU-------------UUGGUCUAUAUAUAGCUGGUCGUAUA-----UA--U------AC--UGCCAUG-G ((((((.....(((....)))..(((.((..(((((.......-------------.)))..........))..)))))...-----..--.------..--)).))))-. ( -16.00) >consensus CAUGCAAAUGAGACAUUAGUCAAACGCAGUGGCCCAUCAGCCUGGUCCGCUGAAUAUCGGUCUAUAUAU____GUACAUAUA_____UA__U______AU__CAACAUAGA (((....))).(((....))).....((((((.(((......))).))))))........................................................... (-10.88 = -12.10 + 1.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:24 2006