Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,479,969 – 5,480,081 |
Length | 112 |
Max. P | 0.660122 |
Location | 5,479,969 – 5,480,081 |
---|---|
Length | 112 |
Sequences | 6 |
Columns | 118 |
Reading direction | reverse |
Mean pairwise identity | 83.70 |
Mean single sequence MFE | -32.82 |
Consensus MFE | -23.09 |
Energy contribution | -23.07 |
Covariance contribution | -0.03 |
Combinations/Pair | 1.12 |
Mean z-score | -2.25 |
Structure conservation index | 0.70 |
SVM decision value | 0.27 |
SVM RNA-class probability | 0.660122 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5479969 112 - 22407834 ------CCGCGGCAGCGCGCAGGGCAAACCCAGGCAGACAUUCAGUCAGCCUGCCGGCAGGACAUCGUUUAAUUGCGAACAAGUUUUUUAACACGAUGUCGGACAACCUCCGCGCCUU ------....(((((.((((.(((....)))..)).(((.....))).)))))))(((..((((((((((((..((......))...)))).))))))))(((.....)))..))).. ( -43.00) >DroPse_CAF1 117759 91 - 1 ------------------------CAGACCCUGGCAGACAUUCAGUCAGCC--CCGGCAGGACAUCGUUUAAUUGCGAACAAGUUUUUUAACACGAUGUUGGACAACCUUCU-GGCUU ------------------------((((((..(((.(((.....))).)))--..))...((((((((((((..((......))...)))).)))))))).........)))-).... ( -23.80) >DroEre_CAF1 100340 96 - 1 ----------------------GGCAAGCCCAGGCAGACAUUCAGUCAGCCUGCCGGCAGGACAUCGUUUAAUUGCGAACAAGUUUUUUAACACGAUGUCGGACAACCUCCGCGCCUU ----------------------(((..((((((((.(((.....))).)))))..)))..((((((((((((..((......))...)))).))))))))(((.....)))..))).. ( -37.00) >DroYak_CAF1 107802 99 - 1 -------------------GAGGGCAAACCCAGGCAGACAUUCAGUCAGCCUGCCGGCAGGACAUCGUUUAAUUGCGAACAAGUUUUUUAACACGAUGUCGGACAACCUCCGCGCCUU -------------------.(((((.....(((((.(((.....))).)))))...((..((((((((((((..((......))...)))).))))))))(((.....)))))))))) ( -36.20) >DroAna_CAF1 107062 112 - 1 CAAAGACCCUGGCA------AAGGCAAACCUUGGCAGACAUUCAGUCAGCCUGCCGGCAGGACAUCAUUUAAUUGCGAACAAGUUUUUUAACACGAUGUCGGACAACCUCCGAGUCUU ..(((((.((((((------((((....))))(((.(((.....))).)))))))))...((((((..((((..((......))...))))...))))))(((.....)))..))))) ( -33.10) >DroPer_CAF1 118489 91 - 1 ------------------------CAGACCCUGGCAGACAUUCAGUCAGCC--CCGGCAGGACAUCGUUUAAUUGCGAACAAGUUUUUUAACACGAUGUUGGACAACCUUCU-GGCUU ------------------------((((((..(((.(((.....))).)))--..))...((((((((((((..((......))...)))).)))))))).........)))-).... ( -23.80) >consensus ______________________GGCAAACCCAGGCAGACAUUCAGUCAGCCUGCCGGCAGGACAUCGUUUAAUUGCGAACAAGUUUUUUAACACGAUGUCGGACAACCUCCGCGCCUU ................................(((.(((.....))).)))....(((..((((((((((((..((......))...)))).))))))))(((.....)))..))).. (-23.09 = -23.07 + -0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:23 2006