Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,474,780 – 5,474,875 |
Length | 95 |
Max. P | 0.811800 |
Location | 5,474,780 – 5,474,875 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 78.90 |
Mean single sequence MFE | -27.53 |
Consensus MFE | -10.32 |
Energy contribution | -11.43 |
Covariance contribution | 1.11 |
Combinations/Pair | 1.10 |
Mean z-score | -2.64 |
Structure conservation index | 0.37 |
SVM decision value | 0.24 |
SVM RNA-class probability | 0.650158 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5474780 95 + 22407834 CCCAAUCAAGUGCUACCUGAUAUCAGUCUCGCAACGCCCCAAACCAA--AACCCUCGACACUCGAAGGGAUCAGUCUG-------GAGUCU---AGAUAGCACUUGU ......(((((((((.(((((.((((.((.((...))..........--..((((((.....)).))))...)).)))-------).))).---)).))))))))). ( -28.70) >DroPse_CAF1 112035 104 + 1 CCCAAUCAAGUGCUACCUGACAUCCGUCGCGCAACGCCCUAAACCGAACAAAUCUCGACACUCUCACGGAUCAUU--GGAGUGG-UCGUCCCAACGAUCGCACUUGU ......(((((((..((....((((((.(((...))).......(((.......)))........))))))....--))...((-((((....))))))))))))). ( -27.90) >DroEre_CAF1 95141 94 + 1 CCCAAUCAAGUGCUACCUGAUAUCAGACUUGCAACGCCCCAAGCCAA--AACCCUCGACACUCGGAGGGAUCAGUCUG-------CAGUCU---AGAU-GCACUUGU ......(((((((.....(((..((((((......((.....))...--..(((((........)))))...))))))-------..))).---....-))))))). ( -28.50) >DroYak_CAF1 102366 102 + 1 CCCAAUCAAGUGCUACCUGAUAUCAGACUCGCAACGCCUUAAACCAA--AACCCUCGACACUCGAAGGGAUCAGUCUGCAGUCUGCAGUCU---AGAUAGCACUUGU ......(((((((((.(((((..((((((.((((((........)..--..((((((.....)).))))....)).)))))))))..))).---)).))))))))). ( -33.70) >DroAna_CAF1 102068 95 + 1 UCCAAUCAAGUGCUACCUGAUAUCAGUCUCGCAACGCCCUAAACCCG--AACUCUCGACACUCUCCGAGAUCAGUCCC-------UAGUCC---GGAUCGCACUUGU ......(((((((...(((....)))..................(((--.(((((((........)))))........-------..)).)---))...))))))). ( -20.00) >DroPer_CAF1 112743 104 + 1 CCCAAUCAAGUGCUACCUGACAUCCGUCGUGCAACGCCCUAGACCGAACAAAUCUCGACACUCUCACGGAUCAUU--GGAGUGG-UCGUCCCAACGAUCGCACUUGU ......(((((((..((....((((((.(((...(......)..(((.......))).)))....))))))....--))...((-((((....))))))))))))). ( -26.40) >consensus CCCAAUCAAGUGCUACCUGAUAUCAGUCUCGCAACGCCCUAAACCAA__AACCCUCGACACUCGCAGGGAUCAGUCUG_______UAGUCC___AGAUCGCACUUGU ......(((((((...(((((.........((...))..............((((..........))))))))).............(((.....))).))))))). (-10.32 = -11.43 + 1.11)
Location | 5,474,780 – 5,474,875 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 107 |
Reading direction | reverse |
Mean pairwise identity | 78.90 |
Mean single sequence MFE | -38.63 |
Consensus MFE | -13.64 |
Energy contribution | -14.28 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.16 |
Mean z-score | -2.99 |
Structure conservation index | 0.35 |
SVM decision value | 0.65 |
SVM RNA-class probability | 0.811800 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5474780 95 - 22407834 ACAAGUGCUAUCU---AGACUC-------CAGACUGAUCCCUUCGAGUGUCGAGGGUU--UUGGUUUGGGGCGUUGCGAGACUGAUAUCAGGUAGCACUUGAUUGGG .((((((((((((---.(.(((-------(((((..(..((((((.....))))))..--)..)))))))))(((....))).......))))))))))))...... ( -44.50) >DroPse_CAF1 112035 104 - 1 ACAAGUGCGAUCGUUGGGACGA-CCACUCC--AAUGAUCCGUGAGAGUGUCGAGAUUUGUUCGGUUUAGGGCGUUGCGCGACGGAUGUCAGGUAGCACUUGAUUGGG .(((((((((((((((((....-....)))--)))))))(.(((.(.(((((.(...(((((......)))))...).)))))..).))).)..)))))))...... ( -39.00) >DroEre_CAF1 95141 94 - 1 ACAAGUGC-AUCU---AGACUG-------CAGACUGAUCCCUCCGAGUGUCGAGGGUU--UUGGCUUGGGGCGUUGCAAGUCUGAUAUCAGGUAGCACUUGAUUGGG .(((((((-((((---.((...-------(((((((..(.((((((((..((((...)--))))))))))).)...).))))))...)))))).)))))))...... ( -33.00) >DroYak_CAF1 102366 102 - 1 ACAAGUGCUAUCU---AGACUGCAGACUGCAGACUGAUCCCUUCGAGUGUCGAGGGUU--UUGGUUUAAGGCGUUGCGAGUCUGAUAUCAGGUAGCACUUGAUUGGG .((((((((((((---.((...((((((((((((..(..((((((.....))))))..--)..)))........))).))))))...))))))))))))))...... ( -45.40) >DroAna_CAF1 102068 95 - 1 ACAAGUGCGAUCC---GGACUA-------GGGACUGAUCUCGGAGAGUGUCGAGAGUU--CGGGUUUAGGGCGUUGCGAGACUGAUAUCAGGUAGCACUUGAUUGGA .((((((((((((---(((((.-------..(((...((.....))..)))...))))--))))))...............(((....)))...)))))))...... ( -31.40) >DroPer_CAF1 112743 104 - 1 ACAAGUGCGAUCGUUGGGACGA-CCACUCC--AAUGAUCCGUGAGAGUGUCGAGAUUUGUUCGGUCUAGGGCGUUGCACGACGGAUGUCAGGUAGCACUUGAUUGGG .(((((((((((((((((....-....)))--)))))))(.(((.(.(((((.(...(((((......)))))...).)))))..).))).)..)))))))...... ( -38.50) >consensus ACAAGUGCGAUCU___AGACUA_______CAGACUGAUCCCUGAGAGUGUCGAGAGUU__UUGGUUUAGGGCGUUGCGAGACUGAUAUCAGGUAGCACUUGAUUGGG .(((((((.(((......................(((..(......)..))).((.....(((((((...((...)).)))))))..)).))).)))))))...... (-13.64 = -14.28 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:19 2006