Sequence ID | 2L_DroMel_CAF1 |
---|---|
Location | 5,473,433 – 5,473,550 |
Length | 117 |
Max. P | 0.544378 |
Location | 5,473,433 – 5,473,550 |
---|---|
Length | 117 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 80.15 |
Mean single sequence MFE | -19.56 |
Consensus MFE | -12.37 |
Energy contribution | -13.18 |
Covariance contribution | 0.81 |
Combinations/Pair | 1.17 |
Mean z-score | -1.44 |
Structure conservation index | 0.63 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.544378 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>2L_DroMel_CAF1 5473433 117 + 22407834 AAAAGAAAC---AGCCGAAACGGGAAAUUGUUGCUGCCUGUUUUUUAUGGGCACAAACAAUAGUAAAAUAAAAUUUAAGGCGGCAGGCGACAAAGUAAACACCAUAAUAAAUACGCGUUU .....((((---.(((..(((((....)))))(((((((...((((((..((..........))...))))))....))))))).)))......(((..............)))..)))) ( -23.04) >DroPse_CAF1 110130 96 + 1 ----------------AAAACCAGAAAUCGGUGCUGCAUUUU-UUUAUGACUACAAACAAUAAUAAAAUGAAAUUUAAGGCAGCAGGCGACAAAGUAAACACAAUAAUAAAUG------- ----------------...........(((.((((((....(-(((((...................))))))......))))))..))).......................------- ( -12.21) >DroEre_CAF1 93810 116 + 1 AAAAGAAAC---AACCGAAACGGGAAAUUGUUGCUGCCCGUUUUUUAUGGGCACAAACAAUAGUAAAAUAAAAUUUAAGGCGGCAGGCGACAAAGUAAACACCAUAAUAAAUACG-AUUU .........---..(((...)))...((((((..(((((((.....)))))))..)))))).................((.(....((......))...).))............-.... ( -20.90) >DroYak_CAF1 101048 120 + 1 AAAAGAAACAACAACCGAAACGGGAAAUUGUUGCUGCCCGUUUUUUAUGGGCACAAACAAUAGUAAAAUAAAAUUUAAGGCGGCAGGCGACAAAGUAAACACCAUAAUAAAUACGGAUUU ..............(((.........((((((..(((((((.....)))))))..)))))).................((.(....((......))...).))..........))).... ( -23.40) >DroAna_CAF1 100604 117 + 1 AAAACAAAC---AUCUGAAACGAGAAAUUGUUGCUGCCUUUUUUUUUAUGCCACAAACAAUAGUAAAAUGAAAUUUAAGGCGGCAGGCGACAAAGUAAACACCAUAAUAAAUACGGAGUU ......(((---.((((.(((((....)))))((((((((...((((((...((........))...))))))...)))))))).............................))))))) ( -25.20) >DroPer_CAF1 110855 97 + 1 ----------------AAAACCAGAAAUCGGUGCUGCAUUUUUUUUAUGACUACAAACAAUAAUAAAAUGAAAUUUAAGGCAGCAGGCGACAAAGUAAACACAAUAAUAAAUG------- ----------------...........(((.((((((.....((((((...................))))))......))))))..))).......................------- ( -12.61) >consensus AAAAGAAAC___A_CCGAAACGAGAAAUUGUUGCUGCCUGUUUUUUAUGGCCACAAACAAUAGUAAAAUAAAAUUUAAGGCGGCAGGCGACAAAGUAAACACCAUAAUAAAUACG_AUUU ...........................((((((((((((...((((((...................))))))....)))))))).)))).............................. (-12.37 = -13.18 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 10:17:17 2006